| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_4180 |
|---|
| Symbol | |
|---|
| ID | 8328373 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 4918488 |
|---|
| End bp | 4919435 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 78% |
|---|
| IMG OID | 644944644 |
|---|
| Product | D-aspartate oxidase |
|---|
| Protein accession | YP_003101881 |
|---|
| Protein GI | 256378221 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.251055 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCGAA TCGCCGTGAT CGGCGCCGGG GTGGTCGGGC TGACGGTGGC GCACGAGCTG
TCGGCGGCCG GGCACGGGGT CGAGGTGGTG GCCGGGGCGG ACCACGCGGG GTCGGTGTCG
TCGGTGGCCG CCGCGATCTG GTTCCCGCAC GCCGTGGGCA GCTCCGAGCG GGTGCTGGAG
TCCGGGAGGG CGACCGGCGA GCGGCTGGCC GCGCTGGCGG CGGACCCGGC GACGGGCGTG
CGGCTGCGCA CCGGCACCGT CCTGTCCCGC AGGCCCGACC CCGACCGGTC GTGGACGGCG
GCCGTGCCCG CGTGGCGGGA GGCGGACGCG ACGGAGGTGC CGGAGGGCGC GCGGGGGGTC
GTGGTGACCC TGCCGGTGGC GGTGACGGAC GTGTACCTGG GCTGGTTGCG GGCGCGGGTG
GAGCGGCGGG GCGTGGTGTT CCGCACGGCC GAGCTGGTCG AGCCGGAGGA CGTGGGCGCG
GGGTTCGACG CGGTGGTGGT CGCGGCCGGG CTGGGCTCGG GGGCGCTGCT GGGCGATGCG
GAGGTTCACC CGATCCGGGG CCAGGTGGTG CGCCTGGCCA ACCCCGGCCT GACCCGCTGG
GTGACCGACG ACGACAACCC CGGTGGGCTG ACGTACGTGG TGCCGCGCGA CGGGGACGTG
GTGTGCGGCG GGACCGGCGA CGTGGGCGAG TGGGGCACCG AGCCGGACCC TGAGGTCGAG
GCGGCGATCC TGCGCAGGGC GACCGCGCTG GCGCCGGAGC TGGCCGGGTG CCCGGTGGTG
TCGCGCGCGG TGGGCCTGCG CCCGGCGCGG CCACGGGTGC GGCTGGAGGT CGTGCCGGGG
CGGGGACTGC CGGTGGTGGC GTGCTACGGG CACGGCGGGG CGGGGTTCAC GCTGTCCTGG
GGCGAGGCGG CCGAGGTGGT GCGGGTGATC GGGGGGTTGG GGGTCTAG
|
|---|
| Protein sequence | MGRIAVIGAG VVGLTVAHEL SAAGHGVEVV AGADHAGSVS SVAAAIWFPH AVGSSERVLE
SGRATGERLA ALAADPATGV RLRTGTVLSR RPDPDRSWTA AVPAWREADA TEVPEGARGV
VVTLPVAVTD VYLGWLRARV ERRGVVFRTA ELVEPEDVGA GFDAVVVAAG LGSGALLGDA
EVHPIRGQVV RLANPGLTRW VTDDDNPGGL TYVVPRDGDV VCGGTGDVGE WGTEPDPEVE
AAILRRATAL APELAGCPVV SRAVGLRPAR PRVRLEVVPG RGLPVVACYG HGGAGFTLSW
GEAAEVVRVI GGLGV
|
|---|
| |