| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3414 |
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| Symbol | |
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| ID | 8327604 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | + |
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| Start bp | 3984443 |
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| End bp | 3986464 |
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| Gene Length | 2022 bp |
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| Protein Length | 673 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 644943918 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_003101158 |
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| Protein GI | 256377498 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGGCGGCG CGTGGCACCG AGAGGTGCTC CAGCGGACCG ACATCGGCTA CGGCGTGACG
GACCCCGCCA CCACCCTGAG GTGGGCCAAC CCCGCGCTGG CAGGCATCCT CGGCATCGAT
CCCGAGCACC TGCCGGGCCG CTCCCTGTCG GCGCTGCTCC CCGGAGCCCC CGACCGGCCG
AGGCCGGGCC TGGCGCTGCT GACCCCGGCG GGGGAGGGCC ACCGGTGGCT GGAGGTGACC
TGCCAGCGGC TCGACGCCTC CGGCGGGGAC CTGCTGTACC GGGTCGCCGA CGTCACCGCG
TGGCGCGACC GGGAGCTGGA GGCCACCCAC GAGGCCGACG CGCTGCGCCG CGCGCAGGTG
CTGGGCCGCA TGGGCACCTG GGAGTGGCAC ATCGCCGAGG ACCGCGTCGA GTGGTCCGAC
ACCCTGCTGG GCATGTTCGG CTACCCGGCC GGGACCGCCC TGGACTACGC CGCGTACACC
GGGCACGTCC ACCCCGACGA CCTGCCCACC ATCCAGTCCA CCCTCACCGA GGCGCTGCGC
ACCGGGGCCG GGTTCTCCTA CACGCACCGC ATGACGTTGG GCGACGGCGT CACCGAGCGC
TGGTTCGAGT GCTTCGGCGA GGTCGTCACC GACCCCGACG GGACCCCGCA GCGGGTGCTG
GGCACCGCGC ACGACATCAC CCAGTCCCGG CGCGTGCACG ACGAGCTGCT GGCCCTGGCC
GAGCAGGACC CGCTGACGGG CCTGGCGAAC CGGCGGGCGG TCACCCGCGA GCTGGAGCGC
CGCCTGGCCA CCGGCGGCAC CGGGTCGCTG CTGCTGCTGG ACCTGGACAA CTTCAAGGAC
GTCAACGACC TGCGCGGGCA CGCCGTGGGC GACCGGCTCA TGCGGGCCCT GGCCGCCGCG
CTGCGCACCC GCCTGGAACC GGAGCACCTG ATCGGCAGGC TGGGCGGCGA CGAGTTCGCG
GTGGTGCTGC CCGACACCGG CCCCGCCGAC GCCGCCCGCG TGGCCGAGCA CCTGCGCGAC
ACCATCGCCC GCCTGCCGCT GGCCACCCCG GCCACCCGCA CCACCATCAG CACGGGCGTG
GCCGGGTACG GCACGAGCGG CGACACGTGG GAGCTGGTGC TGGCCAACGC CGACCTGGCG
CTCTACGCGA GCAAGGCGGC AGGCCGCAAC CGGGTCACCG TGTACGAGCC GGGCCACTAC
GCCGACACCG CCAAGCGCGT GTCCGTGCTG GACCGGCTGC GCGGTGCGCT GGACGGCGGG
GGCCTCGCGC TGCACGCGAT GCCGATGGTG CGCCTGGCCA CCGGCCGCGT CCTCGGGCAC
GAGCTGCTGC TGCGCCTGGA GGACGGGCAG GAGCCGCGCC TGGGCCCCGC GGACTTCCTG
CCCGAGGCCG AGCGCACCAA CCTGGTGCAC GAGATCGACC GGTGGGTGCT GGCCACCGCC
ATCGACACCC TGGTGCGCCA CCCCGACCCG GAGTTGCGGT TCAACGTCAA CGTCTCCGGC
CGCACCCTGG AGGACCCGGA GTTCGGCGGG TTCGTCCTCG ACCGGCTCGC CGGGGCCGGG
GTGGCGCCGG GCAGGCTCGG CATCGAGATC ACCGAGACCG CCGCCGTGAC GAACCTGGAC
GCCGCCCGCA CCCTCGCCCA CCAGCTGCGC GGCCACGGCT GCCGGATCGT GCTGGACGAC
TTCGGCTCCG GGTTCGGCTC GTTCGTGCAC CTCAAGCACC TGCCCATCAC CGGCATCAAG
ATCGACGGCG AGTTCGTGCG CGGCATCGAC GAGCGCGGCC CGGACGCGGT GCTGGTGTCC
GGGATCATGC GCATCGCCCA GGGGCTCGGG CTGTCGGCCG TGGCCGAGTG GGTGGAGCGC
CCCGAGCAGG TCCGCACCCT CACCAGCCTC GGCGTCCGCG TCGGGCAGGG CTTCCACCTC
GGCGGCCCGG TGCCGCTGGG GCAAGTCCTT TCAGCCCAAC CGCAGGCACC GGACGGCGCA
TTGTCCCCGG AGCGAAACCC TGCGATAGAT AGGCGTTCCT AG
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| Protein sequence | MGGAWHREVL QRTDIGYGVT DPATTLRWAN PALAGILGID PEHLPGRSLS ALLPGAPDRP
RPGLALLTPA GEGHRWLEVT CQRLDASGGD LLYRVADVTA WRDRELEATH EADALRRAQV
LGRMGTWEWH IAEDRVEWSD TLLGMFGYPA GTALDYAAYT GHVHPDDLPT IQSTLTEALR
TGAGFSYTHR MTLGDGVTER WFECFGEVVT DPDGTPQRVL GTAHDITQSR RVHDELLALA
EQDPLTGLAN RRAVTRELER RLATGGTGSL LLLDLDNFKD VNDLRGHAVG DRLMRALAAA
LRTRLEPEHL IGRLGGDEFA VVLPDTGPAD AARVAEHLRD TIARLPLATP ATRTTISTGV
AGYGTSGDTW ELVLANADLA LYASKAAGRN RVTVYEPGHY ADTAKRVSVL DRLRGALDGG
GLALHAMPMV RLATGRVLGH ELLLRLEDGQ EPRLGPADFL PEAERTNLVH EIDRWVLATA
IDTLVRHPDP ELRFNVNVSG RTLEDPEFGG FVLDRLAGAG VAPGRLGIEI TETAAVTNLD
AARTLAHQLR GHGCRIVLDD FGSGFGSFVH LKHLPITGIK IDGEFVRGID ERGPDAVLVS
GIMRIAQGLG LSAVAEWVER PEQVRTLTSL GVRVGQGFHL GGPVPLGQVL SAQPQAPDGA
LSPERNPAID RRS
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