| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3279 |
|---|
| Symbol | |
|---|
| ID | 8327469 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 3809590 |
|---|
| End bp | 3810456 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 644943791 |
|---|
| Product | 3-hydroxyacyl-CoA dehydrogenase NAD-binding |
|---|
| Protein accession | YP_003101031 |
|---|
| Protein GI | 256377371 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.873252 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGAGAGC AGGGCGGCAG GACGGTGCTC GCCGTTCTCG GCGCGGGCAC GATGGGCCTG
GGGATCACCT CCCTGGCCGT CGGGCACGGC GTGCCGGTGG TGCTGGTCGA GACCGACCGG
GCCAAGGTCG GGCGGGCGCG GGAGGCGGTG GCCGCCCAGC TGCGCATGGC CAGGCTGATG
CGGGCGCTGC CCGAGGACCG CGAGCGGGGC GAGCTGCTCA CCACCACCTC GCTCGCCGAC
GTCGCGGACG TCTCGCTGGT GGTGGAGGCG GTCACCGAGG AGCTGCCGGT CAAGGCCGAG
GTGCTGGCCG GGGCCGCCGC GCTCACCGGG CCGCGCGTGC CGCTGGTGTC CAACACCTCC
TCGATCCCGA TCGACGAGCT GGCCGGGCAC GTCCCCGACC CGGCGCGGCT GATCGGCACG
CACTTCATGA ACCCGCCGTA CCTGATCCCC ACGGTCGAGG TCGTCCGGGG CGCGCGCACC
GGCGCGGACG CGCTGGAGAC CCTCGTGGGC GTGCTGGGCG AGCTGGCCCG CACACCGGTC
GTCGTCGGCG ACGGCCCCGG CTTCGTGACC AGCCGGATCG TCCACCCGAT GATCAACGAC
GCGATCCGCG TCGTCCAGGA GGGCACGGCC TCCGTCGAGG CCGTGGACGC CCTCATGCAG
GACTGCCTCG GCCACCGCAC GGGACCGCTG CTCACGGCCG ACCTGATCGG CCTGGACAAC
CTGGCCGACT CGCTGCGCGT GCTGGCCGAG CGCACCGGCG ACCCCCGCTC CGCGCCCTGC
GAGCTGCTGC TGCGCAAGGT CCGCGACGGG CACCTCGGGC GCAAGTCCGG GCGGGGCTTC
TACGACTACG GGAAGGCACA GCTGTGA
|
|---|
| Protein sequence | MGEQGGRTVL AVLGAGTMGL GITSLAVGHG VPVVLVETDR AKVGRAREAV AAQLRMARLM
RALPEDRERG ELLTTTSLAD VADVSLVVEA VTEELPVKAE VLAGAAALTG PRVPLVSNTS
SIPIDELAGH VPDPARLIGT HFMNPPYLIP TVEVVRGART GADALETLVG VLGELARTPV
VVGDGPGFVT SRIVHPMIND AIRVVQEGTA SVEAVDALMQ DCLGHRTGPL LTADLIGLDN
LADSLRVLAE RTGDPRSAPC ELLLRKVRDG HLGRKSGRGF YDYGKAQL
|
|---|
| |