| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_2675 |
|---|
| Symbol | |
|---|
| ID | 8326864 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 3013345 |
|---|
| End bp | 3015956 |
|---|
| Gene Length | 2612 bp |
|---|
| Protein Length | 870 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 81% |
|---|
| IMG OID | 644943215 |
|---|
| Product | Tetratricopeptide TPR_4 |
|---|
| Protein accession | YP_003100456 |
|---|
| Protein GI | 256376796 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00129539 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACC GCCGTCCGCC GCCCCTGCGC GGCCGGGAGG CCGAGCTGGC CCGCCGCGTC
GACCTGCTCG CGCGCGGCGC GGGCGGCGCG CTCGTGCTCG AAAGGGCCTC CGGCAGCGGC
AAGACCCGGT TGCTGGACGA GGTCGCCGCG CGGGCGCTCG ACGCCGGGCT GCGGGTGTTC
ACCGGCGCGT GGCAGCGCGG CTGGCAGGTG CTGGAGCTGC TCGACGGGCT GCCCGGCGCG
GGCGGGGGCC GGTGGCGGCG GGCTGGTGCG GGAGCTGCAC GACAGCCTGG AGCGGGCCGC
GCTCGACGCG CCCGTGCTGG TGGTGCTGGA CGACTTCCAG TGGCCGACCC CGCCGCCGCC
AAGGCCGCCC GCGTCCTGGT GCGCCGCCCG GCCGCCGACC CGGTGCTGTG GGTGATCGCC
CGGCGGCCCG CGCCGGACGA CCACCCGGAC GTCCCGGTGC TGCGGCTGGG CGACCTGGAC
GCCGCAGCGG TCCGCGACCT CGCGCGGGAC GCGCTCGGCG GCGCGCCGGA CGCCCCGCTG
ACCGGGCTGC TCGCGGGCGC CCTGGGCACC CCGCTGCTCA TCGGCGAGCT GCTGCACGGC
CTGCTCGACG AGGCGGCCGT GCACGTGCGC GACGGCGTCG CCGCGCTGCG CGAGGGGACC
GCGCCACCGC TGCGCTTCCG CGAGTCCGTC CGGGGCCGGG TGCGGCAGCT GTCCGGACCG
GCGCGCGAGG CCGTGCCGTC CTGGGGCGCG TTCACCGCCG GGCAGCTCGC CCGGATGCTG
GACCGCACGC CCGCCGCCCT GCTCGGACCG CTGCGGGAGG CCCTGGACGC CGAGCTGGTG
GTCGAGCGCG GCGAGCGGTT CGCGTTCCGG TACGACCTCC TGCGCGAGGC CGTCGAGGGC
GGGCTGCCCG AACCGCTGCG GCGCGACCTG CGCAGGCAGG CCGTGGAGGC GAGCCTGGCC
GAGGGCGCGC CCGCCGCCGA CGTCGCCGCG CTCGTGCTGC GCACCGCCAC CAGGGGCGAC
CAGCGCTCCA TCGCGCTGCT GCGGCGCGCG GCGGCCGAGA TCGCGCCCCG CTCGCCGGTG
GTCGCCGCCT CGCTGAGCAC GCGGGCGCTG GAGCTGGTGC GGCCCGGCGG GGCCAAGGGG
CCCGTGCTGA CCGACGCGGT GACCCAGCTC GTGCTCGCGG GCGAGGTGGA CGAGGCGTCG
GCGCTGTTCG ACCGGTACGC CGGGGCCGCG CAGGCCCCCG CCACCGCGGC CCGGCTGCGC
CGCCTGCTCG CCGAGGTGCT GCTGCCCGCC GACGTCGCCC GGTCGGCGGC GCTGTGCCGG
GAGGCGCTGG CGCTGCCCGG ACTGGCGGAC GACCCGCGCG CCCAGCCGCA CGCCGTGCTC
GCCACCGCCC TGGTCGTCGC GGGCGAGCGC GCCGAGGCCC GCAGGGAGGC CGAGGCCGCC
ACCGCCGCCG CGTCGGGCTC CACCGCCCCG GTGCCCCGCT CGTCGGTGCT GATCACGGAC
GCGCTCAGCC GGTTCCAGCG CTGCGACCCG GCGGGCGCGC TGCGCGCGGC CGACGCGGCG
ATCCGGGCGC GGGACGCGGC CCTCGGCGCC CGCGCGCTGT GGCTGCCCGA CCGGGGCAAG
GCGCTGCTGC TCGCCGCGCC CGGCCGGATC GCCGAGGCGT GGGAGCTGAC CGTGACCGGG
CTCGACCTCG CGCGCGCCGA CGGGCAGCAG GCCAACGAGT GGACCCGGGT GGTGATCCGC
ACCGCGCTGC TGCTGCGCGC CGGGCGGCTG GACGAGGCCC GCGCCGAGGC CGAGGCGGTC
CGGGCGCTGT CCGAGGAGCT GGGCGCGGCG GTGTTCCGCG AGTTCGCCTC CTCGGTGCTC
GGGCACGTCG CGCTGCACCG GGGCGACCTG GCGGCGGCCG GGCGCGCGGC CACGCGGATG
CTCGCGGTCG GGCTGCCGTC GTGGCGGGCG CGCGGGGAGG CGCTGCGGGC ACTGGTGGCC
GAGGCGGCGG GCGAGGCGGC AACCGGGTTC CACGGCGGGT GCGCCGACCC GGTGGCGCTG
GACGGGCCCG CCGAGGTCGC CGGGCTGGTG CGGCTGCTGC TGCGCTCCGG CGAGCGGGAG
CGGGCCGGGG CCGTCGTGGC GCGGCTGGAC GGGGAGGTGG CGCGGCGTCC GGGGGAGCGG
GCGGTGCGGG CCGCCGCCTG GCGCGCGCGG GGCGTGCCGG AGGGGGACGT CGAGCCGCTC
CTCCAGGCGG TGGAGGCGTA CGAGGGGGAC GAGCGGGCGC TGGTGCTGGA GGACGCCGGG
CGCGCTCGCC GGTGCGGACC GGGCCGCCGG GGTGGTGCTG CTGGACTCGG CGCTGGAGCC
GTGGACCGCC GCCGGGGCCG GGCGGGTGCG CGGGGCGCTG CGGCGGCACG GGGTGCGGCG
GCGCGCCCGA GGGGCCCGGC GCGGGCTGGG CCGGGCTGAC CGGGGCCGAG ACCAAGGTCG
CCCGGCTGGT CGCGCTGGGG CGCACGAACC GGCAGGTCGC CGACGAGCTG CACCTGTCGC
CGCACACCGC GAGCACGCAC CTGCGGCACG CGTTCGCCAA GCTCGACGTC CGCACCCGGA
CCGAGCTGGC GCGGCTCGCC CCGAGGGGCT GA
|
|---|
| Protein sequence | MTDRRPPPLR GREAELARRV DLLARGAGGA LVLERASGSG KTRLLDEVAA RALDAGLRVF
TGAWQRGWQV LELLDGLPGA GGGRWRRAGA GAARQPGAGR ARRARAGGAG RLPVADPAAA
KAARVLVRRP AADPVLWVIA RRPAPDDHPD VPVLRLGDLD AAAVRDLARD ALGGAPDAPL
TGLLAGALGT PLLIGELLHG LLDEAAVHVR DGVAALREGT APPLRFRESV RGRVRQLSGP
AREAVPSWGA FTAGQLARML DRTPAALLGP LREALDAELV VERGERFAFR YDLLREAVEG
GLPEPLRRDL RRQAVEASLA EGAPAADVAA LVLRTATRGD QRSIALLRRA AAEIAPRSPV
VAASLSTRAL ELVRPGGAKG PVLTDAVTQL VLAGEVDEAS ALFDRYAGAA QAPATAARLR
RLLAEVLLPA DVARSAALCR EALALPGLAD DPRAQPHAVL ATALVVAGER AEARREAEAA
TAAASGSTAP VPRSSVLITD ALSRFQRCDP AGALRAADAA IRARDAALGA RALWLPDRGK
ALLLAAPGRI AEAWELTVTG LDLARADGQQ ANEWTRVVIR TALLLRAGRL DEARAEAEAV
RALSEELGAA VFREFASSVL GHVALHRGDL AAAGRAATRM LAVGLPSWRA RGEALRALVA
EAAGEAATGF HGGCADPVAL DGPAEVAGLV RLLLRSGERE RAGAVVARLD GEVARRPGER
AVRAAAWRAR GVPEGDVEPL LQAVEAYEGD ERALVLEDAG RARRCGPGRR GGAAGLGAGA
VDRRRGRAGA RGAAAARGAA ARPRGPARAG PGLTGAETKV ARLVALGRTN RQVADELHLS
PHTASTHLRH AFAKLDVRTR TELARLAPRG
|
|---|
| |