| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_2329 |
|---|
| Symbol | |
|---|
| ID | 8326518 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 2588822 |
|---|
| End bp | 2589592 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644942874 |
|---|
| Product | type III secretion system inner membrane R protein |
|---|
| Protein accession | YP_003100115 |
|---|
| Protein GI | 256376455 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
|---|
| TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0502064 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAACCTCG ACATCGGCGT CAACGTCCTG GTCGCGCTGC TGCTGGCCGC GACCCGCTCC
GCCGCCTGGC TGATGGTGTG CCCGCCGTTC AACGGCAAGG CCATCCCGAT GACGGTCAAG
GGGATGCTCG CCGTGGGGCT GGCGCTCCCG GTGGTGCCCA GGCTGTCCGC GGGCAGCGTG
CCCTCGCTGG ACACCTGGTC GCTGGTGATC GCGGCCGGTG AGCAGGTCGT GGTGGGCGCG
GGGCTCGGCT TCCTCACCGC GGTGATCTTC GCCGGGGTGC AGGCGGCGGG CGACCTGCTG
GACGTGTTCG GCGGCTTCTC GCTCGCGTTC GCGTTCGACC CGATGTCGTT CTCCGGCAAC
AACGCGGTGC TGGGCCGCTT CTACGGCCTG CTGGCCACGA CGCTGCTGTT CGTCACCGGC
TCGCACCAGG TGATCATCCG GGGGTTCACC CTGTCGTACG ACGCGATCCC CCTGGACGGC
GGGCTGTCGC TGGGCAGGCT GGGGACGCTG CTGACCACCG GGCTCGGGCA GCTGCTGCTG
TCGGCGGCGC AGATCGCCGG GCCGCTGATC GTGGTGCTGT TCTGCGCGGA CGTGGGCCTG
GGCCTGCTCA ACCGCATCGC GCCCGCGCTG AACCCGTTCC AGATCGGGTT CCCGGCCAAG
ATCGGCCTGA CGCTGGTGCT GGTCGGGCTG ACGATGCCCA TGCTGCCGAT GAGCGTGGAG
AACATCGCGA AGCACGCGGC GTCCGCCGTG ATGGAGGCGA TCGGGAGGTG A
|
|---|
| Protein sequence | MNLDIGVNVL VALLLAATRS AAWLMVCPPF NGKAIPMTVK GMLAVGLALP VVPRLSAGSV
PSLDTWSLVI AAGEQVVVGA GLGFLTAVIF AGVQAAGDLL DVFGGFSLAF AFDPMSFSGN
NAVLGRFYGL LATTLLFVTG SHQVIIRGFT LSYDAIPLDG GLSLGRLGTL LTTGLGQLLL
SAAQIAGPLI VVLFCADVGL GLLNRIAPAL NPFQIGFPAK IGLTLVLVGL TMPMLPMSVE
NIAKHAASAV MEAIGR
|
|---|
| |