Gene Amir_2280 details

Gene Information

• Locus tag: Amir_2280
• ID: 8326469
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 2533375
• End bp: 2535417
• Gene Length: 2043 bp
• Protein Length: 680 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644942825
• Product: DNA gyrase subunit B domain protein
• Protein accession: YP_003100066
• Protein GI: 256376406
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.557074
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGACCGCAG AGATCCTTTA CGGGGCCGAC GACCTCACCC ACCTCGAAGG TCTTGAAGCG 
GTTCGCAAGC GCCCCGGCAT GTACATCGGC TCCACCGACA GCCGAGGGGT CAACCACCTC 
TTCTCCGAGG TGATCGACAA CTCGACCGAC GAGGGAGTCG CAGGGCACGC GACCCGCATC 
ACCGTGACCC TTCACCCGGA CGGAAGCGTC CAGGTGGATG ACGACGGCCG GGGAATCCCG 
ACCGGCGTGC ACGCCAAGTC CGGTCTGTCC GGAGTGGAGC TCGTCCTGAC CCGCCTGCAC 
GCCGGCGGCA AGTTCGGCGG CTCCGGCTAC AAGACCTCGG GCGGCCTGCA CGGCGTCGGC 
GCCTCCGCCG TCAACGCCCT CTCGCACCGC TACGACGTCG TCGTCCGGCG CGAGGGCAAG 
ACCCACGAGA TGTCCTTCGC CCACGGCGTC CCCGGCGTCT TCGACGGGCC GGGCCCGAAG 
GCCGCCTTCA CCCGCCAGTC CGGACTCAGG GTCACCGGCC GCACCCGCAA GACCGGCACC 
TCCACCCGCT ACTGGCACGA CTCGCGCTAC TTCGAGAACG GCGCCGCGCT CGACCACGAG 
GCCGTGCGCG CGAAGCTGCG CAACACCGCG TTCCTCGTGC CCGGCGTCAC CTACGTGCTG 
CGCTCCGCCG TCGACGGCAA GATCGCCGAG GAGGTCTTCC ACTACCCCGG CGGCCTCGCG 
GACATGGTCG ACTTCCTCGC GCCCTCCTCG GAGAAGGCCG TCACCGGCAC GATCGTCATC 
ACCGGTGAGG GCGTCTACCA CGAGAACGCC GCCGACGAGA ACGGCGTCAT GCGCTCCAAG 
GTCGAGCGGC ACGCCGAGGT CGAGATCGCG CTGCGCTGGG GGACCGGCTA CGAGCGCACG 
GTGGAGTGCT TCACCAACAC CATCCGCAAC GTGCACGGCG GCACGCACCG GCGCGGCTTC 
GAGCGCGCCG TGCTCAAGTC CGTGCAGGAG GCCATCGGCC GCACCAGGGG CCTGCTCAAG 
CCGAAGGAGG ACCCGCCCAC CCTCGACGAC GTGCTGGAGG GCATGACCGC GGTCGTGCAC 
GTGCGCGTGC CCGAGCCGCA GTTCACCTCG CAGACCAAGG ACGAGCTGTC CACCGCGGGC 
GTCACCAGGG TCGTGCTCGC CCTGGTGGAC AAGCACGTCA AGGCGTGGAC CGAGGACCGC 
CGCACCAAGG CGGAGGCCAA GGTCGTCCTC CAGAAGGTCG TCGACGCCGC CCGCGTCCGG 
CTCACCCAGA AGCAGCAGAA GGACGCGGCC CGCCGCAAGA CCGCGCTGGA AGGCGCGGCG 
ATGCCGCCCA AGCTCGTCGA CTGCCGCACG ACCGGCGTCG CGCGCAGCGA GCTGTTCCTC 
GTGGAGGGCG ACAGCGCGCT CGGCTCGGCG CGCATGGCCC GCGTCTCCGA GTACCAGGCC 
CTGCTCCCGC TGCGCGGCAA GATCCTCAAC GTGCAGAAGG CGAGCCTGGC CGACACGCTG 
CGCAACGCCG AGATCGCCTC GATCGTGCAA GTCCTGGGCG CGGGCACCGG CCGCACGTTC 
GACCTGTCGA CCATGCGCTA CGGCCGCGTC ATCCTGATGG CCGACGCCGA CGTCGACGGC 
TCGCACATCC GCACCCTGCT CATCACCCTG TTCGCCAAGT ACATGCGACC CGTCATCGAG 
GACGGCAGGC TGTACGCCGC GATGCCCCCG CTGCACAAGG TCGTCACCAA GGGGCGCAAC 
GCGGAGACCC ACTTCACCTT CACCCAGCGC GAGATGGAGC AGAAGGTCGC CCGGTTGGAG 
CGGGCGGGCA AGACCGTGGT CAAGCCCGTC CCCCGGTTCA AGGGCCTCGG CGAGATGGAC 
GCCGAGGAGC TGTGGGACAC CACGATGAAC CCCGCCACCC GCTCGGTCCG CCGCATCACC 
CTCGCCGACG TCGAGGCGGC CGAGGCCGCG CTCGAACTGC TCATGGGCGA GAAGGTGGAA 
CCCCGGCGGG CCTGGCTCGT CGCGTCCGCG GCGCGGGTCG ACCAGTCCGC CATCGACGTC 
TGA 

 

Protein sequence

MTAEILYGAD DLTHLEGLEA VRKRPGMYIG STDSRGVNHL FSEVIDNSTD EGVAGHATRI 
TVTLHPDGSV QVDDDGRGIP TGVHAKSGLS GVELVLTRLH AGGKFGGSGY KTSGGLHGVG 
ASAVNALSHR YDVVVRREGK THEMSFAHGV PGVFDGPGPK AAFTRQSGLR VTGRTRKTGT 
STRYWHDSRY FENGAALDHE AVRAKLRNTA FLVPGVTYVL RSAVDGKIAE EVFHYPGGLA 
DMVDFLAPSS EKAVTGTIVI TGEGVYHENA ADENGVMRSK VERHAEVEIA LRWGTGYERT 
VECFTNTIRN VHGGTHRRGF ERAVLKSVQE AIGRTRGLLK PKEDPPTLDD VLEGMTAVVH 
VRVPEPQFTS QTKDELSTAG VTRVVLALVD KHVKAWTEDR RTKAEAKVVL QKVVDAARVR 
LTQKQQKDAA RRKTALEGAA MPPKLVDCRT TGVARSELFL VEGDSALGSA RMARVSEYQA 
LLPLRGKILN VQKASLADTL RNAEIASIVQ VLGAGTGRTF DLSTMRYGRV ILMADADVDG 
SHIRTLLITL FAKYMRPVIE DGRLYAAMPP LHKVVTKGRN AETHFTFTQR EMEQKVARLE 
RAGKTVVKPV PRFKGLGEMD AEELWDTTMN PATRSVRRIT LADVEAAEAA LELLMGEKVE 
PRRAWLVASA ARVDQSAIDV