Gene Amir_1682 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_1682 
Symbol 
ID8325867 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand+ 
Start bp1838611 
End bp1839615 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content73% 
IMG OID644942232 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_003099477 
Protein GI256375817 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.810975 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGCGAGC CGGTCCTGGA GATCCGAGCC CTCAACGTCG ACTACGGCCT CGGCGCCGAC 
GCCGTGCGGG CCGTGCGCGA CGTCGACCTG ACCCTGCACC GCGGCGAGGT CCTCGGCCTG 
GCGGGCGAGA GCGGCAGCGG CAAGTCCACC CTCGCCTACG GCATGACCAG GCTGCTCCCG 
CCGCCCGGCG TCGTCGCCTC CGGCGAGGTG CTCTACCACG GCCCCGACGG GCCCGTCGAC 
GTGCTGCGGA TGTCCGACGC GCGGCTGCGC GCGTTCCGCT GGGCCGAGAC CGCGATCGTG 
TTCCAGGGCG CGATGAACTC GCTCAACCCG GTCAAGCGGA TCTCCACCCA GCTCACCGAC 
GTCGTCGCCG CGCACGACAC GGGCAGCACC AAGGCGTCCC GGCTCGCGCG GGCCCGCGAG 
GTGCTCGCGC TCGTCGGCAT CGCCGCCGAC CGGCTCGACA GCTACCCGCA CCAGCTCTCC 
GGCGGGATGC GCCAGCGCGT CATGATCGCC ATGGCGCTGG TGCTGCAGCC CGAGGTCGTG 
ATCATGGACG AGCCCACCAC CGCGCTGGAC GTGGTGGTGC AGCGGCAGAT CCTGCGCCAG 
CTCGTGGACC TGCGCGAGCG GCTCGGGTTC TCCGTCGTGT TCATCACCCA CGACCTGTCG 
CTGCTGGTCG AGTTCTCCGA CCGGATCGCG ATCATGTACG GCGGGCGCAT CGTCGAGCAG 
GCCGGGTCCT CGGAGATCTA CCGGACGCCG CTGCACCCGT ACAGCGAGGG GCTCCTCGGC 
TCGTTCCCCG CGCTGCGCGG CCCCCGCCGC GTGCTCGCGG GCATCCCCGG CTCACCGCCG 
GACCTGCGCG GAATGCCCTC GGGCTGCGCG TTCCACCCCC GCTGTCCGCG CGCGATGGAG 
CGCTGCGGTG TGGAGGTCCC GGCGCTCGGC CTCCCCGGCG ACCAGCCGGA CGCCGACCGC 
GCCGTGGCCT GTTGGCTGCA CCCCGTTCAC GACAACGGGT CCTGA
 
Protein sequence
MSEPVLEIRA LNVDYGLGAD AVRAVRDVDL TLHRGEVLGL AGESGSGKST LAYGMTRLLP 
PPGVVASGEV LYHGPDGPVD VLRMSDARLR AFRWAETAIV FQGAMNSLNP VKRISTQLTD 
VVAAHDTGST KASRLARARE VLALVGIAAD RLDSYPHQLS GGMRQRVMIA MALVLQPEVV 
IMDEPTTALD VVVQRQILRQ LVDLRERLGF SVVFITHDLS LLVEFSDRIA IMYGGRIVEQ 
AGSSEIYRTP LHPYSEGLLG SFPALRGPRR VLAGIPGSPP DLRGMPSGCA FHPRCPRAME 
RCGVEVPALG LPGDQPDADR AVACWLHPVH DNGS