| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_0886 |
|---|
| Symbol | |
|---|
| ID | 8325050 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 976710 |
|---|
| End bp | 979577 |
|---|
| Gene Length | 2868 bp |
|---|
| Protein Length | 955 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644941428 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003098693 |
|---|
| Protein GI | 256375033 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTCGGAC GCCGGCGTGA CCGGGACCGC CGCAACGCGC CGCACGTCGC CCAGCACGCC
GCGCCGGGCG ACACCCGCGG CCAGTCGTCC AGCGGCAAGC GCGCGCGCCG CCTGACCGGC
GAGCAGGTGA TCCCCAGCTA CACCCCGTCC ATCGCCGCCC GGACGATCGA CGGTCACCTG
CTGCGCACCG GCCAGGAGGT GTACGCCTGG TACAAGCTCG CGCCGCAGCG CTGGTCGTTC
CGCTCCGACT CGCAGCGCCA GGACCTCATC GCCGCGATCG CCGGGCAGTA CGCCGAGCTG
CAGGGCCGCT GGATGCACCT GCGCGTGACG ACCCGCCCGT ACCCCATCAG GATGTGGGCC
GAGGCGCACG TCCACAACGC CGTTCGGCGG CTTCCGGACA CCCCCGGCGC GCTCAGCTTC
GACGACTACA TGGTCGGCGA GCAGCAGCAG CTCATGGGCC GGTCCATGGC GGAGAAGGAG
GTGTACCTCG GCGTCCAGGT CCAGACCCGC AACATGATGG ACCGCGCCGT CGAGCGCGCC
GCCCCCGTCC TGCGCCGGGT CTTCCCGGAC GCGGTGGACG CCGAGCTGGT CGCCATCGAG
TCCGAGGTCG ACCACCTCGA CCAGGTCATC GGCTCCGCGG GCCTCGAAGG CCGTCCGGTC
ACCGCCGAGG AGATGTCCTG GCTGATGCAC CGGTCCTGCT CGCTGGGCCT GCCCGCCCCG
CGCAACCTGC CCGCCGTGCC GGGCGCGCCG TGGGAGCCGG AGGACCTGGC CAGCTTCACC
GACGCCGCCG ACTTCCACCA GGAGCCCTAC TCGCCCACGG TCACCGTGCG CGGGCGCACC
GGCTCCAACG CGGGCATCCG GCGCAACGTC GCCGTGCTCA CCGTGGGCCT GATGCACGGC
CTGCAGATCC CCGAGATCGA CGACCCGTGG GTGCAGCGCG CCGACCGGCT GCCCGCCTCC
GTGGAGTGGT CGGCCCGGAT CTACGTGCGC CGCCCCGAGG AGGTCGCGGG CGAGCTGCAG
CGGCAGATGA ACAAGGTCCG CTCGCAGGTG CGGCACTACA CCGACGAGCA CGAGCTGGAG
CCGCCGCAGT CGCTGTCCCG CCAGGCGGGC CGGGTGCTGG AGATCGACGA CGAGATGACG
TCGGGCTTCA CCTCGCTGGG CACCCGCGTG CGCTCGTGGT GGCGCCTGGC GGTGTCCGGG
CCGAACGAGC GCGAGGCGCT GCGCCTGGCC CAGGCCCTGC TCGACCTGTA CAAGCCCAAG
GTCGCCATCG AGCACCCCGA GGCGCAGTAC GCGCTGGCCA GGGAGTTCAT CCCCGGTGAG
GCGCTGTCGT CCTCGGCGTA CCTGCGGCGC GGCTCGGTGC TGTGGGCGGC GTCCTCGGTG
CCGACGGCCA CCGCCGAGGT CGGCGACCGG CGCGGCATCC TGCTGGGCGA GACGGTCACC
GCGACCCGCC GCCCGGTGGC GTGGGACCCG TGGATGGCGC AGGAGCTGCG CGACTCGTCC
GGCCTGAGCG CGCTGGTCGC GGGCCTGGGC GCGGGCAAGT CGTTCCTCGG CGGCGGCATC
GTCTACAAGA CGCTGCGCTC CGGCGCGCAC TGGACGCTGC TCGACCCGTC CGGCCCGCTG
GCCGCGCTGT GCGAGCTGCC CGAGCTGCGC CCCTACGCCC GTCCGATCAA CCTCCTCAAC
GCCCAGCCCG GCATCCTCAA CCCCTACCGG GTGGTGGCCG AGCCGCAGCT CGAGCACTTC
ATGGACGAGG ACGACCCGGA GCGGGCGTGG CGGCGCGAGC GCGCGCTGGC CGCGGCCACC
CGCCGCCGCC TGGTGCTGGA CGCGCTGAGC GGCCTGCTGC CCTACGAGGT GGCCCGGCTG
CCGCAGACCA GGATCGTGCT GCTGCGCGCG GTCCGCACCG TCGGCGGTCG CCCCGACGCG
CACCCCGGCC AGGTGTTCGA GGCGCTGCGC CGCGACGCCT CCGAGCACCA CGAGCACGCC
GTGGTGGTCG CGGACTTCCT GGACGAGCTG CGCGAGCGCA TGTCGCTGCT CATCCCCGAG
GACGACGACG ACCCGTACCG CGACCAGCGC GACGACCGGC TGACCGTGCT CACCATGGCG
GGGCTGAACC TGCCGAAGGA CGGCGTCGGC CGCGAGCACT GGACCGACGC CGAGGCGCTC
GGCGTGGAGA TGCTGAACCT GGCCGCCTGG CTCACCCAGC GCTCCATCTA CGAGCGGCCC
AAGGACCTGC GCAAGGGCGT CTGGATCGAC GAGGCGTTCT TCCTGTCCGA GGTGCCGACC
GGCCGGGTGC TGATGAACCG GTTCGCCCGC GACTCGCGCA AGTGGAACGT GCGCGTGCTG
CTGTCCAGCC AGATCCCGGC CGACTTCCTC AAGATCCAGG GCTTCGTGGC CCTGCTGGAC
TCGGTGTTCG TCGGGCGGCT GGACGACGAC CAGGCGCAGG CCGACGCGCT GCGGCTGCTC
AAGGTGCCGG TGGGCGTGGG CTACGAGCAG GTCGTGGCGA GCCTGGGCCG CAGGCCGGGC
GGGGTGCGCA ACGCCACCGA GCGGGACCGG GCGCCGCGCC AGTTCATCTT CGCGGACGGC
GCGGGCGGCG TGGAGCGGAT CAAGATCGAC TTCTCCGGCC CGCACCTGGA GCACCTGCGC
CAGTCCCTGG ACACCACCCC GGACGCGCTG CGCGAGAGCG CCGCGGCTGC CGAGGCGCAG
GCGGTGCTCC CGGCCCAGGA CCCGCTCGCG TACGACGACA GCTATCCCGA CGAGGACTAC
GACGACGAGT TGGCGGCCGA CCTGGAGGTC GGCCTCGCCG ACGATTTGGT CGACTCCGCG
CACGGTGAGG GAGGAAACCG CCGAGGCGGT CGGGAAGGTG CGGCATGA
|
|---|
| Protein sequence | MFGRRRDRDR RNAPHVAQHA APGDTRGQSS SGKRARRLTG EQVIPSYTPS IAARTIDGHL
LRTGQEVYAW YKLAPQRWSF RSDSQRQDLI AAIAGQYAEL QGRWMHLRVT TRPYPIRMWA
EAHVHNAVRR LPDTPGALSF DDYMVGEQQQ LMGRSMAEKE VYLGVQVQTR NMMDRAVERA
APVLRRVFPD AVDAELVAIE SEVDHLDQVI GSAGLEGRPV TAEEMSWLMH RSCSLGLPAP
RNLPAVPGAP WEPEDLASFT DAADFHQEPY SPTVTVRGRT GSNAGIRRNV AVLTVGLMHG
LQIPEIDDPW VQRADRLPAS VEWSARIYVR RPEEVAGELQ RQMNKVRSQV RHYTDEHELE
PPQSLSRQAG RVLEIDDEMT SGFTSLGTRV RSWWRLAVSG PNEREALRLA QALLDLYKPK
VAIEHPEAQY ALAREFIPGE ALSSSAYLRR GSVLWAASSV PTATAEVGDR RGILLGETVT
ATRRPVAWDP WMAQELRDSS GLSALVAGLG AGKSFLGGGI VYKTLRSGAH WTLLDPSGPL
AALCELPELR PYARPINLLN AQPGILNPYR VVAEPQLEHF MDEDDPERAW RRERALAAAT
RRRLVLDALS GLLPYEVARL PQTRIVLLRA VRTVGGRPDA HPGQVFEALR RDASEHHEHA
VVVADFLDEL RERMSLLIPE DDDDPYRDQR DDRLTVLTMA GLNLPKDGVG REHWTDAEAL
GVEMLNLAAW LTQRSIYERP KDLRKGVWID EAFFLSEVPT GRVLMNRFAR DSRKWNVRVL
LSSQIPADFL KIQGFVALLD SVFVGRLDDD QAQADALRLL KVPVGVGYEQ VVASLGRRPG
GVRNATERDR APRQFIFADG AGGVERIKID FSGPHLEHLR QSLDTTPDAL RESAAAAEAQ
AVLPAQDPLA YDDSYPDEDY DDELAADLEV GLADDLVDSA HGEGGNRRGG REGAA
|
|---|
| |