| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_4194 |
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| Symbol | |
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| ID | 4670427 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008765 |
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| Strand | - |
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| Start bp | 29057 |
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| End bp | 31054 |
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| Gene Length | 1998 bp |
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| Protein Length | 665 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 639826868 |
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| Product | hypothetical protein |
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| Protein accession | YP_974030 |
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| Protein GI | 121582498 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | [TIGR02759] type IV conjugative transfer system coupling protein TraD |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0224168 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAAGA GAGAGGAAAA GGGAAGCGCC GGTAGCTTCT CCCGTGGGGC CGAGTTGTGG
ATGCACCAAG CCCGGCTGTT CGTGGTGGCC ATCTGGACGG TTGTGCTGAT TTCCATCTTG
GCCGGTCTGG CAGTCACGAC CGCGTACTTC TGGAATGCGA CTACCGCAGA CGAAAAGTAC
GCGCTGGAGC GGAACGTCTT GGCGCACACG CGGGATGCGC TCTACATGAC GGCCGGAAAG
ATGGAGCTGA ACGTCAACGG CGAGCTGCGC AAGATGGAAG TTTCCGAGGT TGCCTTGCTG
ACCGACGAGA TGGCCGAGGA TGCTTGGCGA AAGCTGCGCA ACGGCGGCAT GTTCGGCTTG
CTGACTTCCA TCGGTGTGGT GTTTCTGATC TCTTTGTACT GGTGGGGCTA TGGCCGTGAA
CGTATGCAGG ACAACCAACT GCGCGGGGCC AAGCTGGTGG AAGGAAAGGA GCTTGCGCGA
CTGATCCGAC ACCGCGACGA GGCAAGCCCT TATGAGATTG CGGGCGTGCC CATGCGCGTG
AAGTCAGAGA CGCTGCATAC GCTGTTTGCC GGCGCGCAGG GTACGGGTAA GTCACAGCAG
TTTTTCGCAC TCATGAAACA GGTGCGGGCG CGTGGCAAGC GGATGATCGT GTATGACCCG
ACCGGCGAGT TCACCCAGGC GTTCTACCGT GAAGGCAAAG ACATCCTGAT GAACCCGCTG
GACTCCAGAA GCCCGAACTG GAACATCTGG AACGAAATCG CCAAGGACTA CCACTTCGAC
AACATGGCGA ACGGCCTGAT CCCCGATCCG GCCGAGTCCG ATCCATTTTG GGCGCTTGCG
GGCCGGATGG TGCTAAAGGA CGTGATTGCA GTATTGGGGC GCGAGGGCCG CCGCACGAAC
CGCGACCTCT ACAACGCTAT CGCCAAGAGC AACCTGGACG CCATGCACGC ATTGTTGCAG
GGGACAGCGG GCGCAACCTA TGTTGATCCC ACGACCGAGC GCACGGGGAT GTCACTCAAG
ATGACTGTTC AGAACCAGCT TGAAGCCTTC CGGTTTTTGC CAGATGAGGG CGAATCGTTC
TCCATCCGAA AATGGGTACA TGAAGAAGGC GATTCATGGA TGTTCATCAC AGCACGGGAA
GCGATGCGCG AGGCATTGAA GCCCGTTCTG TCGTTGTGGA TCGACACGGC AATCAAGGCC
GTGCTTGACT TGGAGCCGAT CCACCGCGAG CGGCTTTGGT TTTGCATTGA CGAGCTGCCG
ACACTCCAAA AACTCGACAT CCTGAAGCTG GCTCTGACGA ACACACGGAA GTACGGTTTG
TGCATGGTGC TGGGCGTGCA GGACTTCAGC CAGCTCTACG AAATCTACGG GCACGATCTG
GCCAAGACGA TCATTTCCGG GTGCCAAACG AAGCTGCTGC TGCGTGTGAC GGATGGAGCT
GCGGCGAAGC TGTTGGCCGA ATTGATGGGA CAGGCCGAGG TGGATGAAAA GGATGAAACC
TTGAGCTACG GCCTCAGCTC GCAGCGTGAC GGCGTGAGCG TGATGGCGCG CCGACAGATG
CGCGACCTTG TGCTGACATC GGAGATTTTG ACGTTGCCCG ATATGACCGG CTATCTGCTG
GTTCCGGGCG ACTATCCCAT TGCCCGCGTC AAGTATGGTT ACGTGCCGAC AGAGAAACAG
GCCAACGGCT TCATCGAGCG CGACGGCTTT GCGATCAGCT TCAAGCCGAC CACGGCGGCC
GCAGCGCCGG CACCCGCTCC GTCCGCCGCT GAAGTTCAGC AGCCGGCCGC GCCGGAGCAG
GGCGACATGT TGGATGACGA CGATATGGAC GCGCCGGCTA CGGTGGAGGT TATGCGCAAC
GAAAATGGCG ATGTGATCGA CAAGGCAACC GGCGAAATCA TCAAGCCAGC CGAGAAGGTT
TCGCGCGCGA AAGATGATGC AGATGCGAAA TCAGCCGGCC AGGGCAAGAA GCCCAACCCG
CTGGCGGATG CGCTATAG
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| Protein sequence | MAKREEKGSA GSFSRGAELW MHQARLFVVA IWTVVLISIL AGLAVTTAYF WNATTADEKY
ALERNVLAHT RDALYMTAGK MELNVNGELR KMEVSEVALL TDEMAEDAWR KLRNGGMFGL
LTSIGVVFLI SLYWWGYGRE RMQDNQLRGA KLVEGKELAR LIRHRDEASP YEIAGVPMRV
KSETLHTLFA GAQGTGKSQQ FFALMKQVRA RGKRMIVYDP TGEFTQAFYR EGKDILMNPL
DSRSPNWNIW NEIAKDYHFD NMANGLIPDP AESDPFWALA GRMVLKDVIA VLGREGRRTN
RDLYNAIAKS NLDAMHALLQ GTAGATYVDP TTERTGMSLK MTVQNQLEAF RFLPDEGESF
SIRKWVHEEG DSWMFITARE AMREALKPVL SLWIDTAIKA VLDLEPIHRE RLWFCIDELP
TLQKLDILKL ALTNTRKYGL CMVLGVQDFS QLYEIYGHDL AKTIISGCQT KLLLRVTDGA
AAKLLAELMG QAEVDEKDET LSYGLSSQRD GVSVMARRQM RDLVLTSEIL TLPDMTGYLL
VPGDYPIARV KYGYVPTEKQ ANGFIERDGF AISFKPTTAA AAPAPAPSAA EVQQPAAPEQ
GDMLDDDDMD APATVEVMRN ENGDVIDKAT GEIIKPAEKV SRAKDDADAK SAGQGKKPNP
LADAL
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