| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3708 |
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| Symbol | |
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| ID | 4673008 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | + |
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| Start bp | 3926730 |
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| End bp | 3928943 |
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| Gene Length | 2214 bp |
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| Protein Length | 737 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639840740 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_987895 |
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| Protein GI | 121595999 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.253417 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCGCCCT GCTGGCACAC AAGCGCCCGG CGCGCCGCCG GACGCGCCTG CTCGCCAAAG
GCCAGGCGTT GGGATATAAG CTCCGGGACC GACCGCCCAC TGGCACTGGA TATGCCCTCC
CCTCGCCCCC CTGCCTCCCC CCCCCTGCCC GACCTGGGCC CCCGCGCCAG TGATGCGCTG
CTGCGGCTCA TCGCCGACTC GGTGCCCGTC ATGCTGGCCT ATTACGAATC GACCAGCCTG
CGCTGCGTGT TCGCCAACCA GCGCTATGCC GCCTTCAGCG GGCAAACGGT GCAGAGCATC
ATCGGCAAGA CGGTGCGCGA GGCGATCGGC GAAAAGGCCT GGCAGGAGAT CCTGCCCTAC
GTGCAGCGCG CGCTGGCTGG GGAGAGCGTT CAGTACACCC GCGAATACGC CGGCCCGCAG
GGGCGCGCGC ATATGCTGGA GATCAGCCTG CAGCCGCACT TCGGGGTGCG CGAAGGACGC
AACGCGATGG TGGGTGCATT CGTGCTCATC AACGACATCA CCCACCACTG GGAGGCCGAG
CGCGCCGTGC GCCAGAGCGA GGAGCGCATG CGCAAGTTCG CCATCGCTAC CGAGGAGGGA
CTTGCCTTTC ACCGCGACGG GCGCATTCTG GATGCCAACG AAGCGCTGCA GCGCATGGTT
GGCTATTCGC TGGCCGAGCT CGTAGGCCAA TCCATCTTCG ATTTCGCGCT GCCCGAGTAC
CGCGCGCTGG CCGTGGAATA CACGCGCCGC GGCAGCGAGA AGCCCTACGA GCTCGCCATG
CGCCACAAGG ACGGCCGCGT GATCCCGATC GAGGTGGTGG GCAAGACCAT GCCCCAGCAG
GAGGGCGACT ACCGCGTGGT GGTGGTGCGC GACATCACGG CGCGCAAGCA GGCGCAGGAG
CAGGCGCAGG TGCAGGCGCG CTTCCTGGTG CTGCATGACA CGCTGACCCA ACTGCCCAAC
CGGCGCCACC TCATGATGCA GCTGGCACGC ATGGCGAGTG CCGCGCAGGA GCGGCAGACC
CGCGCCGCCG TGCTGTTCAT CGACCTGGAC CACTTCAAGA CGGTCAACGA GTTGCTGGGA
AACCAAGCCG GCGACCAGCT GCTGATCGAG ATGGCGCGGC GCCTGCAGGA CGGGGTGAAG
GCCACCGACT TCGTCGCGCG TGTGGGCGGC GACCAATTCA TCGTGCTGCT GCCCGACCTG
GCCAACCGCG CCGCAGCGGC CGAAGTGGCC GATGCGCTGC TGGCGCGCGT GCGCGCCGAG
TTCGCCATCG GTGGCACGCC GCTGTCGCTA TCACCCTCCA TCGGCATCAG CGTCTTTCCG
GACGACGGCT ACAGCCCCGA CGAGCTGCTG CGACGCGCCG ACGCGGCCAT GCACCACACC
AAGGAAAGCG GGCGGGGCAC GCGCATGTTC TATGAACCGG GCATGGAAGG CCAACCCACG
GAGCTGCTGC AGCAAGAGCA CCTGCTGCGC GAGGCCGTGT TCCAAGGGGC CTTCGCACTG
CACTACCAGC CCCAGGTGCG GGTGGCCGAC GGCCGGCTGG TGGGCTTTGA GGCGCTGGTG
CGTTGGCGAC ACCCGGTGCG CGGCCTCGTG GGGCCGGATG AGTTCATTCC GCTCGCCGAA
TCGCGCGGGC TCATCACGCC CATTGGGCGC TGGGTGCTGC GCGAGGCCTG CCGCCAGCTC
AAGGCATGGC ACGACGAAGG GCTGCCCCGG GTGCCGGTGG CGGTGAACCT CTCTGCCATC
GAGTTCCGCC AGCGCGACGT GGTGGGCGAG ATCGCCCAGG TGCTGCAGTC GGCGGGGCTC
GCACCGCAGT ACCTGGAGGT GGAGATCACC GAATCCGCCC TCATGCAGCA GGCCGACCAC
ACGCGCACCA CCCTGCAGGC CCTGCAGGCC CTGGGCGTTG CCGTAACGGT GGACGACTTC
GGCACGGGCT ACTCGTCGCT GGCCTACCTC AAACGCTACC CGCTGGACAA GATCAAGGTG
GACCGCTCCT TCGTCACCGA CACGCCTGCC GACAGCGAAG ACGTGGCCAT CGTCACCGCC
ATCATCCAGC TCGCGCACAG CCTGCAGCTG CAGCCCGTGG CCGAAGGCGT GGAGACCGCG
GAGCAGCTCG CGCTGCTGCA GCGCCTGGGC TGCGAACTGG CGCAGGGCTT TGGCATCGCA
CCGCCCATGG ATGCGCAGCG CGCCCGCGAG TGGCTGCGCG CCCAGGCCGA GTGA
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| Protein sequence | MPPCWHTSAR RAAGRACSPK ARRWDISSGT DRPLALDMPS PRPPASPPLP DLGPRASDAL
LRLIADSVPV MLAYYESTSL RCVFANQRYA AFSGQTVQSI IGKTVREAIG EKAWQEILPY
VQRALAGESV QYTREYAGPQ GRAHMLEISL QPHFGVREGR NAMVGAFVLI NDITHHWEAE
RAVRQSEERM RKFAIATEEG LAFHRDGRIL DANEALQRMV GYSLAELVGQ SIFDFALPEY
RALAVEYTRR GSEKPYELAM RHKDGRVIPI EVVGKTMPQQ EGDYRVVVVR DITARKQAQE
QAQVQARFLV LHDTLTQLPN RRHLMMQLAR MASAAQERQT RAAVLFIDLD HFKTVNELLG
NQAGDQLLIE MARRLQDGVK ATDFVARVGG DQFIVLLPDL ANRAAAAEVA DALLARVRAE
FAIGGTPLSL SPSIGISVFP DDGYSPDELL RRADAAMHHT KESGRGTRMF YEPGMEGQPT
ELLQQEHLLR EAVFQGAFAL HYQPQVRVAD GRLVGFEALV RWRHPVRGLV GPDEFIPLAE
SRGLITPIGR WVLREACRQL KAWHDEGLPR VPVAVNLSAI EFRQRDVVGE IAQVLQSAGL
APQYLEVEIT ESALMQQADH TRTTLQALQA LGVAVTVDDF GTGYSSLAYL KRYPLDKIKV
DRSFVTDTPA DSEDVAIVTA IIQLAHSLQL QPVAEGVETA EQLALLQRLG CELAQGFGIA
PPMDAQRARE WLRAQAE
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