| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3485 |
|---|
| Symbol | |
|---|
| ID | 4674162 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 3680919 |
|---|
| End bp | 3681956 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639840517 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_987674 |
|---|
| Protein GI | 121595778 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGACCTTGC AGGCCAGCGT TTCGATGAGT TGGGTGAACA CCGTGCTGGC CGCCGCCGAG
CGCGCGGGCG TGGCGCGCGA GCGCCTGCTG GCGCAGGCGG GCATCGTGCC GGCCGAGCTG
GCGCACGAGC GCTGGCCCAT TGACCACATC ACGCGGCTGT GGCGCGCAGC CGTGCACTGC
ACGCAGGATT CGGGTTTTGG CCTCAAGGTG GGGGCACAGG TGGGGCCGGG CAGTTTCAAT
GTGGTGAGCT ACCTGCTGCA GTCCGCGTCC AGCCTGCGCG CGGCCATTGC CGCGGTGCAG
CAGTACCAGC GCCTCATCAG CGACGGCGGG CGTTTCCAGA TGATCGCGGG CGAAACCGCC
AGCTGGGTGG TGTACCACCC GCGCCAGGGC GCGCTGGCAT TCAGCCCGCA CCAGATCGAG
GCGGTGCTGG CCGCGGTCGT GGCGTTTGCG CGGTGGGTCA CGGGACAGGT GGTGCGTCCG
CGGCAGGCGC AGTTCAGCCA GGCACGCATC GGGCCGCTGG CGGGCTACCG CGAGGCCTTC
GGCTGCGCCG TGGAATTCGA GCAGGCCTTC AGCGGCGTGC TGCTGGACAA CGCGCTGTTG
GACGCGCCGC TGCCCCAGGC CGACGAGCAG CTCGCGCGCC TGCACCGCGA ACATGCGACG
ACACGGCTGG CGGCACTGTC AGCGCCGGCC GACCTGGCAC AGGCGCTGCA CGCATGGATG
GCCGATCAAT TGCAAGCGCC GCTGCACGGC AAGGCGCCCG AGCGCGCCCA GGCCGCGGCA
GCGCTGGGAC TGAGCGAGCG CACCCTGGCG CGACGCATGC AGGCGCTGGG CTTGAGCTAC
ACCGCCGTAC TGGACGCGGC GCGGCACCAG GCCGCACTGC ACGCGCTGGC GCAGGCGGAC
CGCCCGCTGG GCGAGATCAG CCAGTCGCTG GGGTTCGCGG AGCCCAGCGT GTTCAACCGG
GCCTTTCGCC GCTGGACAGG CTGCACACCG GGGCAGTGGC GGCAGGCCGC GCGGCCACCG
GGCGAACCCT CGGCGTGA
|
|---|
| Protein sequence | MTLQASVSMS WVNTVLAAAE RAGVARERLL AQAGIVPAEL AHERWPIDHI TRLWRAAVHC
TQDSGFGLKV GAQVGPGSFN VVSYLLQSAS SLRAAIAAVQ QYQRLISDGG RFQMIAGETA
SWVVYHPRQG ALAFSPHQIE AVLAAVVAFA RWVTGQVVRP RQAQFSQARI GPLAGYREAF
GCAVEFEQAF SGVLLDNALL DAPLPQADEQ LARLHREHAT TRLAALSAPA DLAQALHAWM
ADQLQAPLHG KAPERAQAAA ALGLSERTLA RRMQALGLSY TAVLDAARHQ AALHALAQAD
RPLGEISQSL GFAEPSVFNR AFRRWTGCTP GQWRQAARPP GEPSA
|
|---|
| |