| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3157 |
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| Symbol | |
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| ID | 4673559 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | + |
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| Start bp | 3337264 |
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| End bp | 3340758 |
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| Gene Length | 3495 bp |
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| Protein Length | 1164 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639840199 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_987358 |
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| Protein GI | 121595462 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCTGC CCAAACTCTC CCCCGGAAAA CGATTCACCC TGCCCCGCCC CGTGGGCAGC
GCCGACGCCT TGCTGCTGGC CCGCCTGGGC GAGCGTGAAA AGGCCGCAGG CCGCACCACC
GCCATCGTCA CCGCCGATGC AACCGACGCC CAGCGTCTCA TCGACGAGAT GGCCTTCTTC
GCGCCCGAGT TGCGCTGCGC GCTGTTTCCC GACTGGGAAA CGCTGCCCTA CGACAGCTTC
TCGCCGCACC AGGACCTGAT CAGCGAGCGG CTGGCCACAC TCTGGCGCAT CCAGCAGCGC
GACAAGGACA CGGGCGCCGA CGTGGTGCTG GTGCCGGCCA CCACGGCGCT GTACCGGCTG
GCGCCGCCCT CGTTCCTGGC GGGCTACACC TTCCATTTCA AGGTGAAGCA GAAGCTGGAC
GAGGCCAAGC TGCGCGCCCA GCTCACGCTC GCGGGCTACC AGCATGTGTC CCAGGTGGTG
GGCCATGGCG AATACGCGGT GCGCGGCGGG TTGATCGACC TGTTCCCGAT GGGTTCGGCC
GTGCCGTACC GGGTGGACCT GTTCGACGAC GAGATCGACT CCATCCGCAC GTTCGACCCC
GACAGCCAGC GCAGCCTCTA CCCGGTGCCC GAGGTGCGCC TGCTGCCCGG GCGCGAGTTC
CCCATGGACG ACGCGGCGCG CGCCAAGTTC CGCCAGCGCT GGCGCGAGCT GCTGGAGGGC
GACCCCACGC GCAGCCGCAT CTACAAGGAC ATGGGCAACG GTGTGGCCAC GGCGGGCATC
GAGTACTACC TGCCGCTGTT CTTCGACGAG ACGGCCACCG TGTTCGATTA CCTCGGCAAC
GAAGCCACCG TGGTGCTGCA CGGCGACCTG GAGACGGCCT TCCAGCGCTT CTGGCAGGAC
ACGCGCGACC GCTACCGCCT GATCCAGGGC GACCCGGACC ACCCCACCCT GCCGCCGGAG
GCGCTGTTCC TGGGCGCCGA GCAGTTCTAC GCCCAGGCCA ACCAGCACGC CCAGTTGTCG
CTGCGCCCCG GTGTGGAAGA CGTGGCGGAC AACGCGCAGT TCCAGAAGCT GCCCGACCTG
TCCGTGGTGC GCGGCGCCGA GGACCCGCTG GCGCGGCTGC AGGCGCACAT CCGCGCCACG
GCGCAGCGTG TGCTGCTGCT GGCTGAAAGC GACGGCCGGC GCGAGAGCCT GCTGGATTTC
CTGCGGACCT CGGGGTTGAA CCCGCCGGCT TTCGACTCGC TGGCTGAGTT CCAGTCCACG
CCCGAGGAAC GTGTGGGCAT CGCCACGGCG GCGCTGGCCT CGGGCTTCGC GTGGATGGAA
GAAGGCCTGG ACCTGGTCAC CGAGACCGAG CTGTTCGCCG CCGGCTCCAC CACGCGCCGG
CGCAAGAAGC AGGAGCAGGC CAGCGACGTC GAAGCGCTGA TCAAGGACTT GTCCGAGCTG
AAGGTGGGCG ACCCGGTGGT GCACAACCAG CACGGCATCG GGCGCTACCG CGGCCTCATC
CACATGGATG TGGGCAACAA GAACCCCGAC GGCAGCCCCG CGCTGCAGGA GTTCCTGCAC
CTGGAATACG CCGACAAGGC CGTGCTCTAC GTGCCCGTGA GTCAGCTACA ACTCATCGGC
CGCTACACGG GCGTGTCTGC CGACGAGGCC CCGCTGCACA AGCTGGGCAG CGGCCAGTGG
GAAAAGGCCA AGCGCAAGGC CGCCGAGCAG GTGCGCGACG CCGCGGCCGA ACTGCTCAAC
ATCTACGCCC GCCGCGCCGC GCGCGAGGGG CATGCCTTCC GCTACTCGCC CAACGACTAC
GAGCAGTTCG CCAACGACTT CGGCTTCGAG GAGACCGCGG ACCAGAAGGC CGCGATCCAC
GCCGTGGTGC AGGACATGAT CAGCCCGCGC CCCATGGACC GGCTGGTCTG CGGCGACGTC
GGCTTTGGCA AGACCGAGGT CGCACTGCGC GCCTGCTTCG TGGCCGTGGC CGGGGGCAAG
CAGGTAGCGT TCCTGGCGCC CACCACGCTG CTGGCCGAGC AGCACTACCG CACGCTGAGC
GACCGCTTCA GCAAGTGGCC CGTGAAGGTG GCCGAGGTCT CGCGCTTTCG CTCGGGCAAG
GAGATCACCG CCGCCGTGAA GGGCATTGCC GACGGCACGG TGGACATCGT CGTGGGCACG
CACAAGCTGC TCAGCGAATC GACCCAGTTC AAGAACCTGG GCCTGCTCAT CATCGACGAA
GAACACCGCT TCGGCGTGCG CCACAAGGAG GCGATGAAGC AGTTCCGCGC CGAGGTGGAT
GTGCTCACGC TCACCGCCAC GCCGATCCCG CGCACCATGG GCATGGCGCT GGAGGGGCTG
CGCGACCTGT CCGTGATCGC CACCGCGCCG CAGCGGCGCC TGGCCATCAA GACCTTCGTG
CGCAACGAAG GCACGGGCGT GATCCGCGAG GCCGTGCTGC GCGAGCTCAA GCGCGGCGGC
CAGTGCTACT TCCTGCACAA CGAGGTCGAG ACCATCGAGA ACCGGCGCCA GAAGCTCGAA
GAGATATTGC CCGAGGCGCG CATCGCCGTG GCCCACGGCC AGATGCCCGA GCGCGAGCTG
GAGCGCGTGA TGCGCGACTT CGTGGCCCAG CGCTACAACA TCCTGCTGTG CTCGACCATC
ATCGAGACCG GCATCGACGT GCCCACGGCC AACACCATCA TCATCAGCCG CGCCGACAAG
TTCGGCCTGG CGCAGCTGCA CCAGTTGCGC GGGCGCGTGG GCCGCAGCCA CCACCAGGCC
TACGCCTACC TGATGGTGCC CGACATCGAC GGCCTGACCA AGCAGGCGCA GCAGCGCCTG
GACGCCATCC AGCAGATGGA GGAGCTGGGC AGCGGCTTCT ACCTGGCCAT GCACGACCTG
GAGATCCGCG GCGCGGGCGA GGTGCTGGGC GAGAGCCAGA GCGGCAACAT GATGGAGATC
GGCTTCCAGC TCTACAACGA GATGCTGGCC GAGGCGGTGA AGCAACTCAA GGCCGGCAAG
GAGCCCGACC TGCTCGCCCC CATGCAGGCC GCCACCGACA TCAACCTGCA CGCCCCGGCC
CTGCTGCCCG ACGACTATTG CGGCGACGTG CACCTGCGCC TGTCGTTCTA CAAGAAGCTG
GCCACTGCCA AGACCGGCGA CCAGATCGAC GGCCTGCTCG AAGAGATCGT GGACCGCTTC
GGCAAGCTGC CGCCGCAGGC GCAGACGCTG ATCGACGTGC ACCGTCTGCG TGTGCTGTCC
GCGCCCTACG GCGTCGTGAA GGTGGATGCC GCCCCCGGCG TGATCACCAT CACCTTCAAG
CCGCAGCCCC CGGTGGACCC GATGGCCATC ATCCACCTGA TCCAGAAAAA CAAGCACATC
AAGCTGGCGG GCAATGAGAA GCTGCGCATC GAGCGCGAGC TGCCCGACCC CGCCGCGCGC
GCCCAGATGG TGCGCGACGT GCTGCGCAGC CTGGGCCAGC CGCTGGCCGA GGCGCAGGCC
GCCGTCCCCG CCTAG
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| Protein sequence | MQLPKLSPGK RFTLPRPVGS ADALLLARLG EREKAAGRTT AIVTADATDA QRLIDEMAFF
APELRCALFP DWETLPYDSF SPHQDLISER LATLWRIQQR DKDTGADVVL VPATTALYRL
APPSFLAGYT FHFKVKQKLD EAKLRAQLTL AGYQHVSQVV GHGEYAVRGG LIDLFPMGSA
VPYRVDLFDD EIDSIRTFDP DSQRSLYPVP EVRLLPGREF PMDDAARAKF RQRWRELLEG
DPTRSRIYKD MGNGVATAGI EYYLPLFFDE TATVFDYLGN EATVVLHGDL ETAFQRFWQD
TRDRYRLIQG DPDHPTLPPE ALFLGAEQFY AQANQHAQLS LRPGVEDVAD NAQFQKLPDL
SVVRGAEDPL ARLQAHIRAT AQRVLLLAES DGRRESLLDF LRTSGLNPPA FDSLAEFQST
PEERVGIATA ALASGFAWME EGLDLVTETE LFAAGSTTRR RKKQEQASDV EALIKDLSEL
KVGDPVVHNQ HGIGRYRGLI HMDVGNKNPD GSPALQEFLH LEYADKAVLY VPVSQLQLIG
RYTGVSADEA PLHKLGSGQW EKAKRKAAEQ VRDAAAELLN IYARRAAREG HAFRYSPNDY
EQFANDFGFE ETADQKAAIH AVVQDMISPR PMDRLVCGDV GFGKTEVALR ACFVAVAGGK
QVAFLAPTTL LAEQHYRTLS DRFSKWPVKV AEVSRFRSGK EITAAVKGIA DGTVDIVVGT
HKLLSESTQF KNLGLLIIDE EHRFGVRHKE AMKQFRAEVD VLTLTATPIP RTMGMALEGL
RDLSVIATAP QRRLAIKTFV RNEGTGVIRE AVLRELKRGG QCYFLHNEVE TIENRRQKLE
EILPEARIAV AHGQMPEREL ERVMRDFVAQ RYNILLCSTI IETGIDVPTA NTIIISRADK
FGLAQLHQLR GRVGRSHHQA YAYLMVPDID GLTKQAQQRL DAIQQMEELG SGFYLAMHDL
EIRGAGEVLG ESQSGNMMEI GFQLYNEMLA EAVKQLKAGK EPDLLAPMQA ATDINLHAPA
LLPDDYCGDV HLRLSFYKKL ATAKTGDQID GLLEEIVDRF GKLPPQAQTL IDVHRLRVLS
APYGVVKVDA APGVITITFK PQPPVDPMAI IHLIQKNKHI KLAGNEKLRI ERELPDPAAR
AQMVRDVLRS LGQPLAEAQA AVPA
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