| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_2484 |
|---|
| Symbol | |
|---|
| ID | 4673144 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 2646965 |
|---|
| End bp | 2647474 |
|---|
| Gene Length | 510 bp |
|---|
| Protein Length | 169 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639839552 |
|---|
| Product | tripartite ATP-independent periplasmic transporter DctQ |
|---|
| Protein accession | YP_986721 |
|---|
| Protein GI | 121594825 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.01974 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGACGCC TGTTGAACTT CCTCTATGAC GGCGCCGCCG CGCTGGCGGC GCTGTGCATG
GTGGCGCTTC TGTGCGCCGT GCTGCTGTCC ATCGTGAGCC GGCAGCTCAG CTTCCATGTA
CCGGGCATCG ACGCCTACGC GGGCTACCTC ATGGCGGCTG CGGGCTTTCT GGCGCTGGCG
CATACCCTCA AGCGCGGCGA GCACATCCGC GTGACGCTGG TGCTGAGCGC CCTCAAGGGG
CGCGCGCACC AGGCGCTGGA GCTGTTCGCG CTGGCCCTGG GCACGCTGCT GGCCGTGCTG
TTCGCGTACT ACAGCGTGCG GCTGGCCTGG CAGTCGCATG CGTTCAACGA CATCTCCACC
AGCAGCGACG CCACGCCGCT GTGGCTGCCG CAGCTGTCCA TGGGCGTAGG CGCGATGGTG
ATGGCGATAG CCTTCGTGGA CGAACTGGTG CTGCAGCTCC TGGGCCGGCG CGCGGGCGCC
AGGCCGGGCG AAGCCCTGCG CAACGAATGA
|
|---|
| Protein sequence | MRRLLNFLYD GAAALAALCM VALLCAVLLS IVSRQLSFHV PGIDAYAGYL MAAAGFLALA
HTLKRGEHIR VTLVLSALKG RAHQALELFA LALGTLLAVL FAYYSVRLAW QSHAFNDIST
SSDATPLWLP QLSMGVGAMV MAIAFVDELV LQLLGRRAGA RPGEALRNE
|
|---|
| |