| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_1894 |
|---|
| Symbol | |
|---|
| ID | 4671216 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 1982407 |
|---|
| End bp | 1983381 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639838975 |
|---|
| Product | pyridoxal-5'-phosphate-dependent enzyme, beta subunit |
|---|
| Protein accession | YP_986150 |
|---|
| Protein GI | 121594254 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1171] Threonine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0510457 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.19276 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCAC CTGCCCTGCC CCCGCCCGTA CCGGAAGACG TCATCCAGGC TGCTCTGCGC
CTGCAAGGCC CGGCGCACCG CACGCCCGTG CTGCGCTCGG GCACCGCCGA CCGGCTGCTG
CACGCGCACC TGTTCTTCAA ATGCGAGAAC CTGCAACGCG CAGGCTCGTT CAAGTTTCGT
GGCGCTTTCA ACACCCTGTC CCAATTCACG CCAGAGCAGC GCCGCCACGG CGTGCTGGCT
TTTTCAGCAG GCAACCACGC CCAGGCCATT GCACTGGCCG CGCGCCTGCT GGACATGCCC
GCGCTGATCG TCATGCCCGA AGATGCGCCC GCATCCAAAA TGGCCGCCAC GCGCGAATAC
GGCGCCCAGG TCGTCACCTA CAACCGCTAC ACCGAAGACC GCGAGGCCAT CAGCCAGCGC
ATTGCCCAGG AGCGCGGCAT GACGCTGGTG GGGCCCTCCG AGCACCCGCA CGTCATTGCA
GGCCAGGGCA CGGCGGCGCT GGAACTGTTT GAAGAGGTGC CCCGGCTGGA CTACCTGTTC
GTGGGCGTGG GCGGCGGCGG CCTGATGGCG GGCAGCCTGT TGGCAGCGCA GGCACGCGCG
CCCCAGTGCC AGGTGGTGGG CGTGGAGCCC GAAGCCGCCA ACGACGCACA GCAATCGCTG
CGCAGCGGCC ACATCGTGCG CATTGCCACG CCACGCACCA TTGCCGACGG CGCCCAGGCG
CAAAGCCTGG GGCCGCTGGT GTTTGACATC GTGCGCCGCC AGGGCCACGA CATCACGACC
ACCAGCGACC TGCACCTGAT GCAGGCGATG CGCTTTTTTG CCGAGCGCAT GAAAATCGTC
GTCGAACCCA CGGGCGCGCT GGCTTTTGCA GGTGCGCAGC ACGGCGGCGT GGATATCCGT
GGCAAGCGCG TGGGCATTGT GATCAGTGGC GGCAACGTCG ATCTGGCGCG TTACGCGCGC
TTTCTGGCAG ACTGA
|
|---|
| Protein sequence | MTPPALPPPV PEDVIQAALR LQGPAHRTPV LRSGTADRLL HAHLFFKCEN LQRAGSFKFR
GAFNTLSQFT PEQRRHGVLA FSAGNHAQAI ALAARLLDMP ALIVMPEDAP ASKMAATREY
GAQVVTYNRY TEDREAISQR IAQERGMTLV GPSEHPHVIA GQGTAALELF EEVPRLDYLF
VGVGGGGLMA GSLLAAQARA PQCQVVGVEP EAANDAQQSL RSGHIVRIAT PRTIADGAQA
QSLGPLVFDI VRRQGHDITT TSDLHLMQAM RFFAERMKIV VEPTGALAFA GAQHGGVDIR
GKRVGIVISG GNVDLARYAR FLAD
|
|---|
| |