| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_1882 |
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| Symbol | |
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| ID | 4671174 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | + |
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| Start bp | 1968234 |
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| End bp | 1969934 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639838964 |
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| Product | phage integrase family protein |
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| Protein accession | YP_986139 |
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| Protein GI | 121594243 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.496854 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.778139 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAAAGTA CCCGAGTCTC CAAGCCGGCG AATGCGGAAA AGGAATTCCC CGGCACCGCG
GCCCTCGCGG CGCTGCGCGC CTGGTACGCG GGCCTGGGTG CGCGAGCGGC CGTTGCCCAA
TATCTTGGGG TGGACAGGGC GGACGGCCAG TCCTCTCGCG CAATGCTGGG CGACATCCGC
CGGCAGCTGA CCAAGCATGC GCGCCAGCGG CACCGGGAAG ACCTGGCCAG CCTGCTCGAA
CACTCGGCGG CGGAACGCGC GCAGCGCGCC CGCGCCGTGA TGGATGCGAT CGAGACGCTG
CGGCATCTGC CGGTGCCCGC GCCCATGGTG ACGGACGACC TCGAGCGCTG GCTGCCGGCG
CGTGCCGCCG GCGCCATGAA AGCCCATGGC TTCAAGACCC TGGCCGATCT GACGGTGCGA
ATTCCGCGGC GCCGGCGCTG GTGGACGGGC ATTCCCGGCT TGGGCGCGGC CAGCGCCAGG
CAGATCGAAG CCTTCTTCGC CGCGCACGCG CACCTCACGC AGCAAGCCCG CGCGCTGGTG
CCCATCGGCG CTCAAGATGA TGTGGCGCCC TGGGAAAGGC TGCGCGTGCC CCATGAGGTC
GACGGCTCGC GGGGCACCTT CCGCGCACCC AAGGCCACCT GCACGCTGGA CGCAAACGAC
GACTACGAGG CGGTGCAGGC TTGGCTGGCG CTGCACGAAT CGGCTGCAAC CCAGCGGGCC
TACCGCAAGG AGGCCGAGCG GCTGATTCTG TGGGCCGTTG TGGAGCGCGG CCGGGCGCTG
TCCTCGCTCA CCACAGAAGA CGCGGTCGCC TTTCGCGCCT TCTTGCGACA CCCAGCGCCC
AGGGCCCGCT GGATCGGCCC GGCGCGGCCG CGCTCGTCGC CCGAGTGGCG GCCGTTCATC
GGTGGACTGT CAGCCCGATC GGTGGCCTAC GCGCTGTCGG TGGTGGGCGC CATGTTCCGC
TGGTTGATCC AGCAGCGCTA CCTGCTGGCC AACCCGTTCG CCGGCATCAA GGTGCGCGGC
GCATCGCGCT CCGAATCGCT GGCCGTCACC CGGGTCTTCG GCGAAGGCGA ATGGTCAGTG
ATCCAAGCGG TCGCCGAAGG CCTGGAATGG GGACATGGAT GGCAGGCACC GGCGGCGCAG
CGCCTGCGCT TCGTGCTGGA CTTCGCCTAC GCCACGGGCC TGCGCATCGG GGAGCTGGTC
GGCGCCACGC TGGGACAGAT CGAGACCGAT GCGCATGGCG ATCGCTGGCT GCACCTGGTG
GGCAAGGGCA GTAAGGCCGG CAAGGTGGCG CTGCCGCCAC TGGCTTGTGC GGCGCTGGAC
CGGTATCTGA TGCAGCGCAA GCTGCCGATC ACGCCCGCGC GATGGGATCC GCTGGCACCG
CTCATTGGCA GCCTCGATCA AGAGAGTACA GCGGGCATCA CCGCGACGCG GCTGTGGAGT
GTGATGCGAC GCTTTTTCAC AAAGGTCGCC GAAGTCATTG AGAAGGACAG CCCGGCCACG
GCCGAGAAAC TGCGCCGTGC CAGCCCACAT TGGATGCGCC ACACCCATGC TACGCATGCA
TTGGCGCGCG GGGCCGAATT GACCACCGTG CGCGACAACC TGCGGCACGC ATCGATTTCG
ACGACCTCAA TCTACCTGCA CGGCGACGAG GTTAAGCGGG CGCGGGAGAT GGGGGAGGCT
TTCGCAGCCC GGCGATCTTG A
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| Protein sequence | MKSTRVSKPA NAEKEFPGTA ALAALRAWYA GLGARAAVAQ YLGVDRADGQ SSRAMLGDIR
RQLTKHARQR HREDLASLLE HSAAERAQRA RAVMDAIETL RHLPVPAPMV TDDLERWLPA
RAAGAMKAHG FKTLADLTVR IPRRRRWWTG IPGLGAASAR QIEAFFAAHA HLTQQARALV
PIGAQDDVAP WERLRVPHEV DGSRGTFRAP KATCTLDAND DYEAVQAWLA LHESAATQRA
YRKEAERLIL WAVVERGRAL SSLTTEDAVA FRAFLRHPAP RARWIGPARP RSSPEWRPFI
GGLSARSVAY ALSVVGAMFR WLIQQRYLLA NPFAGIKVRG ASRSESLAVT RVFGEGEWSV
IQAVAEGLEW GHGWQAPAAQ RLRFVLDFAY ATGLRIGELV GATLGQIETD AHGDRWLHLV
GKGSKAGKVA LPPLACAALD RYLMQRKLPI TPARWDPLAP LIGSLDQEST AGITATRLWS
VMRRFFTKVA EVIEKDSPAT AEKLRRASPH WMRHTHATHA LARGAELTTV RDNLRHASIS
TTSIYLHGDE VKRAREMGEA FAARRS
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