| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_1770 |
|---|
| Symbol | |
|---|
| ID | 8323863 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | + |
|---|
| Start bp | 1855712 |
|---|
| End bp | 1857250 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644952900 |
|---|
| Product | acyl-CoA dehydrogenase domain protein |
|---|
| Protein accession | YP_003110357 |
|---|
| Protein GI | 256372533 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACGTGG CCCCTGAGCA GCTCGACGAC GTCGAGCGCA TCGCCCGAGC CGCCCTCGCC
CGACTCGGCA CCGAGGGCAT CGACGACGAC CAAGAGCTCG CGTGGCGCCT CGCGCACGTC
GTGAGCGCTC TCGGCGCCGT GCGAGCACTC GTGGACGATC CGGCGGTACC CCAAGCGCTC
GCGAGCTACG GTGCAGCCCT GTTCCTGCGG GAAGCGGCGA GCGAGCTCGT CGCGCTCGGC
GTCATCGACG ACCTCGGTGC GCTTCCGCTC CCACCGCGAC CGTCCGAGGC GGCCGCTGCC
GAGGTCGCCG AGGCGCCCAC GACGTGGTCG CTGGGGGCCG ACCTCGATCT CGCACGCGAC
ACCTTCGGGC GCTTCGCGCG CGACGAGATC GCACCGGTCG CCGACGAGGT CCATCGGCGC
AACCTCGACG TACCCGAGCG CATCATCGAG GGCCTGGCTG GGCTCGGCGC TTTCGGCCTC
AGCATCCCCG AACGCTACGG AGGCTCCGCC ACCGGAAGCG TCGACGACAC GCTGGCCATG
CTGGTTGCGA CCGAAGCACT CTCGCAGGCC TCGCTCGGGA TCGGCGGCTC GCTGATCACG
CGCCCCGAGA TCATCGCCCG GGCGATCCTT GCCGGTGGCA CCGAGGAGCA ACGGGTCCGC
TACCTGCCAG CGCTCGCGTC GGGCGAGCTC ATGGGCGCTG TCGCCGTAAC GGAGCCCGAC
TACGGCTCCG ATGTCGCCTC GATCACGACG CAGGCGATCC TCGGGCCCGA CACGGCCACC
GTGCGCGGCA CGAAGACCTG GTGCACGTTC GCTGGACGCG CCAACCTGCT CGCGGTCCTC
GCCCGCACCG AGCCCGACCC GAGCCTGCGT CATCGAGGGC TGTCACTCCT CCTCGTCCCC
AAGGATCCCG TCCCGGGCCA CAGCTTCGAC CTCGAGATCG GCGGGGGCCG GCTCACGGGC
CGCGCGATCG ACACGCTCGG CTATCGCGGG ATGCACTCCT ACGAGGTCGC CTTCGACGAC
GTCAGCGTTG CGCGCGAGCA GATCGTCGGC GGCGAGGAGG GACGTGGCCG AGGGTTCTAC
CTCCAGATGG CTGGCTTCGA GAACGGGCGA CTCCAGACGG TGGCGCGAGC AGTCGGACTG
ATGGACGCCG CACTTGCGCA GGCGCGCGCC TACGTCGCCA ACCGGCGCGT GTTCGGACGC
AGTCTCGCCG ACTACACCCT GACCCGGCGC AAGCTCGCTC GCATGGTCGC GACGGTGGCG
GCGGCACGGG CCGCCGCCTA CCGCACCGCA CGTCACCTCG AGACCCCCGA AGGGTCGCTC
GCAGCCTCGA TGGCCAAGGC ATGGTCGTGT CGCCAGGCAG AGTTGGTCAC GCGCGAAGCA
CAGCAGCTTC ATGGTGGCAT GGGCTATGCC GAGGAGTACC CGGTGAGCCG TTACTTCGTC
GATGCCCGGG TGCTCTCGAT CTTCGAAGGC GCCGACGAGA CGCTGTCGCT GCGCGTCATC
GCGCGAGCAG TCGCATCGTC CAGCGAGACG ACACGATGA
|
|---|
| Protein sequence | MHVAPEQLDD VERIARAALA RLGTEGIDDD QELAWRLAHV VSALGAVRAL VDDPAVPQAL
ASYGAALFLR EAASELVALG VIDDLGALPL PPRPSEAAAA EVAEAPTTWS LGADLDLARD
TFGRFARDEI APVADEVHRR NLDVPERIIE GLAGLGAFGL SIPERYGGSA TGSVDDTLAM
LVATEALSQA SLGIGGSLIT RPEIIARAIL AGGTEEQRVR YLPALASGEL MGAVAVTEPD
YGSDVASITT QAILGPDTAT VRGTKTWCTF AGRANLLAVL ARTEPDPSLR HRGLSLLLVP
KDPVPGHSFD LEIGGGRLTG RAIDTLGYRG MHSYEVAFDD VSVAREQIVG GEEGRGRGFY
LQMAGFENGR LQTVARAVGL MDAALAQARA YVANRRVFGR SLADYTLTRR KLARMVATVA
AARAAAYRTA RHLETPEGSL AASMAKAWSC RQAELVTREA QQLHGGMGYA EEYPVSRYFV
DARVLSIFEG ADETLSLRVI ARAVASSSET TR
|
|---|
| |