| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_1248 |
|---|
| Symbol | |
|---|
| ID | 8323322 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | - |
|---|
| Start bp | 1303518 |
|---|
| End bp | 1304552 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644952378 |
|---|
| Product | phospho-N-acetylmuramoyl-pentapeptide- transferase |
|---|
| Protein accession | YP_003109852 |
|---|
| Protein GI | 256372028 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0472] UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase |
|---|
| TIGRFAM ID | [TIGR00445] phospho-N-acetylmuramoyl-pentapeptide-transferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0727939 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGATCGCCA TCCTTGCGAG CGCCTTGGTG TCGCTGGTCG TCGCCGTGGT CGGAACGCCG
TGGCTCATCG AGCGCCAGCG CGCGCGGGGG GTGGGTCAGC AGGTCCGTGA GGACGGCCCG
AGCCGGCACC TGGTCAAAGC CGGGACGCCG ACCATGGGTG GCATTGCCAT CGTGGTCGGG
ACGGCCCTTG GCTGGGCGGT CACGCATGCC CATCTCGGTG TCCAGCTGAG CCGCGGCGGT
ATCGCCGTCG TCGGCCTGAC GATCGCTTCC AGCCTCATCG GGGTCGTCGA CGATCTCTTG
AAGGTGCGCA ATCGGCGCTC GCTCGGGTTG ACCAAGGCGG GGAAGTTCTC GCTCCAGGTC
GCGGTCGCGC TTGCGTTTGC GGTCCTGGCT CGATGGTGGG TCGGAGTCCC TCCGGTGCTC
GCGGTGGTTC GCGTCGGTGG GGCCCAGCTC GAACTCGGGT CGGTCGGGTG GATCGTGCTC
GCGGTCATCG TCGTCGTCGG TTCCTCGAAC GCCGTCAACC TCACCGATGG CCTCGACGGT
CTCGCGGCAG GTTCTGGGAT CTTTGCCTTC GGGGCGCTCG CGCTGATGGC GTATTGGATG
TTCCGCCATG TCGGGCTCTA CCACGTCCCC GATGCGCTCG ATCTCGCGGT ATTCGCCATG
GCAGTCACCG GCGCGCTCGC AGGGTTCCTC TGGTGGAACG CGCCGCCTGC GCGCATCTTC
ATGGGTGACG TCGGGTCGCT CGGCCTTGGG TCCGCCCTCG GTGGCCTTGC CCTGCTCCTG
CACATTGATC TGCTGCTCGT CTTGCTCGGG GGGCTGTTCG TCATCGAGAC GTTGTCGGTC
GTGGCGCAGG TGTTCACCTT TCGCGTCTGG CACCGGCGCA TCTTGCGCAT GTCGCCGATC
CACCACCACT TCGAGCTGCT CGGGTGGCCG GAGACCACCG TGTTGATTCG CTTCTGGATC
ATCGCCGGGG TCTGCACGGC GCTCGCGATC GGCGTGTTCT ATGCCGACTT CCTGTCGCTC
GGAGGGGTCC GATGA
|
|---|
| Protein sequence | MIAILASALV SLVVAVVGTP WLIERQRARG VGQQVREDGP SRHLVKAGTP TMGGIAIVVG
TALGWAVTHA HLGVQLSRGG IAVVGLTIAS SLIGVVDDLL KVRNRRSLGL TKAGKFSLQV
AVALAFAVLA RWWVGVPPVL AVVRVGGAQL ELGSVGWIVL AVIVVVGSSN AVNLTDGLDG
LAAGSGIFAF GALALMAYWM FRHVGLYHVP DALDLAVFAM AVTGALAGFL WWNAPPARIF
MGDVGSLGLG SALGGLALLL HIDLLLVLLG GLFVIETLSV VAQVFTFRVW HRRILRMSPI
HHHFELLGWP ETTVLIRFWI IAGVCTALAI GVFYADFLSL GGVR
|
|---|
| |