| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_1208 |
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| Symbol | |
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| ID | 8323282 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013124 |
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| Strand | + |
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| Start bp | 1262859 |
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| End bp | 1263767 |
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| Gene Length | 909 bp |
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| Protein Length | 302 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644952339 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD subfamily |
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| Protein accession | YP_003109813 |
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| Protein GI | 256371989 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.10341 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCGACGA AGAGTGATAG CGCGCTGAAG CAGAGTTCGC GTAAGCGACG CTCGGTCCAG
GCGGAGGTCG ACTCTGCGCT CCAGGCGGCG GGCCTTGGAG CGGACTCGAT CCGCCTCTTC
CTCGACGATC TCGCCAAGCA CCCCTTGCCG TCGGCGGCTG AACAAGTCGA ACTCGCCAAG
CGCGTGCGCG AGGGCGACGA GGACGCCAAG GCCGAGATGG TCGCCGCCAA CCTGCGGCTC
GTCGTCCACT GGGCGCGCCG CTACCAAGAT CGTGGCGTCG AACTGGCCGA CCTCATCCAG
GAGGGTACGT TCGGCCTCAT CCGGGCTGTC GAGAAGTTCG ACTGGCGACG CGGGTTCAAG
TTCTCGACGT ATGCCACGTG GTGGGTCCGC CAGTCGCTCC AGCGTGCGGT CCACAACCAT
GGTCAGGCGA TCCGCCTCCC CATGGAGGCA GCAGAGCGTT CCCGTCGCGT CGACAACGTC
ACCCGTGAGC TCGCGGCTGA CCTCGGCCGT GCGCCGACCG AAGAGGAGAT CGCGATGGCC
GCGAACCTCT CCGCGAGTCA GCTCGCCGAC GTGCGTCACG CGGCTCGCGT CGTCGCGAGT
CTCGATCAGG CGGTGGGCCC AGAGGGCGAG ACGAGCCTTG GCGATCTCGT GGTCGCCCAG
GACACCTCGT TCGAGGAAGA GGTCGACGAA TCCATCTCGC GGGAAATGCT GCGTCGCGCC
GTCGAAGAGC TCGACGAACT CGAGCGCCAG GTCGTCACCC TGCGTTTCGG TCTCCAAGGA
GATCGGCCTG CTTCCCTCGA GGCGACCGCG CGCATCCTCG GGATCGGACC GCGACGGGCT
CGTCGCCTCG AAGCGAGTGC GCTTGCAAAG CTCGCTGAGA ATCCGCGGCT GAGGACCTCG
GCGGCCTAG
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| Protein sequence | MATKSDSALK QSSRKRRSVQ AEVDSALQAA GLGADSIRLF LDDLAKHPLP SAAEQVELAK
RVREGDEDAK AEMVAANLRL VVHWARRYQD RGVELADLIQ EGTFGLIRAV EKFDWRRGFK
FSTYATWWVR QSLQRAVHNH GQAIRLPMEA AERSRRVDNV TRELAADLGR APTEEEIAMA
ANLSASQLAD VRHAARVVAS LDQAVGPEGE TSLGDLVVAQ DTSFEEEVDE SISREMLRRA
VEELDELERQ VVTLRFGLQG DRPASLEATA RILGIGPRRA RRLEASALAK LAENPRLRTS
AA
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