| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0948 |
|---|
| Symbol | |
|---|
| ID | 8323012 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | + |
|---|
| Start bp | 969247 |
|---|
| End bp | 970887 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644952076 |
|---|
| Product | amino acid permease-associated region |
|---|
| Protein accession | YP_003109560 |
|---|
| Protein GI | 256371736 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0158045 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACAGC AGGCAGTAGA GGGCGGATCC CTTCGCAGGG AGATGTCCTT CGTTGATCTG
GTGATGGCCT GTCTCGGTGC CATCATCGGA TCGGGTTGGC TCTTCGGCGT GCTCTATGCC
GCCAACGCAG CCGGGCCTGC AGCGATCGTC AGCTCGCTCA TCGGGGGCAT TGCGGTGATC
TTCATCGCCC TCGTGTACGC CGAGCTCTCA GGGATGCTCC CGGAGGCGGG CGGGATCGCT
CGCTACCCGG AGTTCACCCA CGGTCCGCTG GTAGGGTTCG TCGGCTCGTG GGGCGCGTTC
CTCGCCTACG CTTCGGTGCC CGCCATCGAA GCCGAGGCGG TGGTGCAGTA CGCCGAGCAC
TACATTCCGA AGCTGACCGG GAACACCGCA CTCGACTTCG TCATCGAGGC GGTGCTGTTG
ATCATCTTCT TCGCCATCAA CGTCTACGGC GTCAAGGCGT TCGCGAAGGT GAACACGGTC
ATCACGTTCT TGAAGTTCGT CGCACCGACG CTCACGGTCA TCGCGTTCTT GTTCGCCGTC
GGCCACTGGA GCAACTACAC GGCGACCTCG ACCGGAGGTT TCATGCCGGA GGGTAGCGCG
GGTATCCTCG GCGCCGTGGC GACCTCGGGC ATCGTGTTCT CGTACCTCGG GTTCCGCCAG
GCAGTGGAGC TCGCTGGTGA GTCGCGCAAC CCACAGCGTG ACGTGCCTCG CGCGATCATC
ACGGCCGTGT TGCTCGCGGT CGCGCTCTAC ACGCTGCTGC AGGTGGTCTT CATCGCCGCG
ATTCCTCACT CCGCGCTCGC CAAGGGCTGG GCGGGCCTGT CGCTGACGTC GCCGTTCGCG
CAGGTCGCGT CCATTATCGG GCTGGGCTGG CTGGCGGCGA TCCTGTACGC CGACGCGGTG
CTGTCGCCCT CGGGCACGGG GCTCATCTAC CTCGGCTCGA CGGGGCGCGT CGTCCTCGGA
TCGGCGCGCA ACCGCTACCT CGGTCAGCTG TTCCGTCGGA TCTCGGACGC GGGTGTGCCG
CTCTACGCGA TGATCGCGAC CCTTGTCGCC TCGATCATCT TCTTGCTGCC GTTCCCGACC
TGGCAGAGCC TGGTGGGCGT GATCTCGTCG GCGACGGTCT TCACCTACAT GATGGGTCCG
GTGTCGCTGG GTGTCTTGCG CAAGCACTAC GCAGAGGCGC ATCGTCCCTA TCGCTTGCCT
GCGGCCTCGG TGCTCTCGCC GATCGCCTTC GTGGTGGGCA CGCTCATCAT CTACTGGACC
GGTTGGGCGA CGGACTGGAA GCTCGCCGTC GGCCTGCTCG GCGGCGTTGT CGTGTACCTG
ATCGCCTCGA GTGCTGGTCA GGGGGTCAAG AAGATCGACG GGGCGGCGAT CCGTCACGGT
GCGTGGGTGA TCGTCTATAT CGTCGCGATG CTCGCCATGG CCTACTTCGG TGCGCACCGC
TTCGGCGCGC CGTTCGATCA CGGCAAGGGG CTCATCCATT ATCCGCTCGA TCTCGTCGTC
GACATCGTCC TTGCCCTCGT CTTCTACTAC TGGGCAGTGG CGTCGGGTCG TCCGAGCACG
GATACGGAGG AGGCCATCCA GCGTGCTGCC GAGCTGCGTC GTCAGACCGC GGCTGGCGGT
TCCGCAGCCA TGAGCGGTTG A
|
|---|
| Protein sequence | MQQQAVEGGS LRREMSFVDL VMACLGAIIG SGWLFGVLYA ANAAGPAAIV SSLIGGIAVI
FIALVYAELS GMLPEAGGIA RYPEFTHGPL VGFVGSWGAF LAYASVPAIE AEAVVQYAEH
YIPKLTGNTA LDFVIEAVLL IIFFAINVYG VKAFAKVNTV ITFLKFVAPT LTVIAFLFAV
GHWSNYTATS TGGFMPEGSA GILGAVATSG IVFSYLGFRQ AVELAGESRN PQRDVPRAII
TAVLLAVALY TLLQVVFIAA IPHSALAKGW AGLSLTSPFA QVASIIGLGW LAAILYADAV
LSPSGTGLIY LGSTGRVVLG SARNRYLGQL FRRISDAGVP LYAMIATLVA SIIFLLPFPT
WQSLVGVISS ATVFTYMMGP VSLGVLRKHY AEAHRPYRLP AASVLSPIAF VVGTLIIYWT
GWATDWKLAV GLLGGVVVYL IASSAGQGVK KIDGAAIRHG AWVIVYIVAM LAMAYFGAHR
FGAPFDHGKG LIHYPLDLVV DIVLALVFYY WAVASGRPST DTEEAIQRAA ELRRQTAAGG
SAAMSG
|
|---|
| |