| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0945 |
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| Symbol | |
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| ID | 8323009 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013124 |
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| Strand | + |
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| Start bp | 964371 |
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| End bp | 965861 |
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| Gene Length | 1491 bp |
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| Protein Length | 496 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644952073 |
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| Product | protein-export membrane protein SecD |
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| Protein accession | YP_003109557 |
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| Protein GI | 256371733 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAAGA CGCGTTGGCT GTGGTCGGTG GTGCTGTCGG CGCTGGTCGC GGTGGCGGCA
TTCATCGGTG TCGTCGAGCT CGCTCACGAT GGGCCGATCC TCGGACTCGA CCTCCAAGGC
GGGGCGAGCG TCGTCTACCG GCCTGCTCGA CCGGTGTCGA CGGCCATCTT GAACGAGACG
ATCGGCATCT TGCGCAACCG GGTCGATGGA CTCGGGATCG CCGATCCGTC CATCGGTCAG
CAGGGCAACG ACATCGTCGT GGAGCTGCCA GGAGTTCGCG ATCCGCGCCA GGCCTTGGCG
CTGATCGGAC AGACGGCGGT GCTGCAGTTC CGACCGGTCG AGTGTACGTG GGCTGCGTAC
GCCCCGACGA AGGGACAGCA CGTCTCGGCC ACTCGGCCAC CGACGTCGTG CCCGACGAGC
GCAGCCGGAC TCGCCGCCGA GGCCGCGGTG CCGACGACGC CGACGCAGGT CGCCCTCCAC
AGCCAGACGG CGGTGCTCGA TCTTCGTCAG GGAACCCAGG TCGTCGGACG CTACCTCGTG
GGGCCAGCCT TGCTCGACGG CAACGCCATC AAGAGCGTGT ACGCGGCGCC CGACACCACC
TCCTCGACCG GGTCATGGCT CGTCGACTTC ACCCTGACGC CGAAGGCCTC GCCGCTGTTC
AATCAGATCG CGAAGACGTT CTACCAACGC CAGCTCGCGA TCGTGCTCGA TGGCACGGTG
ATCTCAGCCC CGCAGATCAC CTCGACGTCG TTCAACGGAC AAGGACAGAT CACCGGCAAC
TTCACCGAGG CGCAGGCCAA CAACCTTGCG CTCGTGCTGC GCTATGGCGC CCTCCCGGTG
CAGCTGGTCC AGCAGACGGT GCAGACCGTC TCGCCGACCC TTGGTGCGAG CGCGCTCCGT
GCGGGCCTCG TCGCCGGCGT CGTCGGCCTC ATCGCCGTGT TGCTCTACAC CATCGTCTAC
TACCGAGTCC TCGGCGTCGT GGTCCTCGCA GGTCTCGTGG TGACGGCCGC GGCGGTCTGG
GCGGTCGTCG CCTACCTGGG GAGGGCGGCG CAGCTCACGC TCGATCTGTC GGGCGTGACC
GGTCTCATCG TGTCCATCGG CCTCATCACC GACTCCTACA TCGTCTTCTT CGAACGGCTC
AAAGACGAGA TCCGTGAGGG GTCATCGATC GGGTATGCGG TCAAGGCGGG GTTCCAGAAG
GCGTTTCGCA CCATCATCGC GGCCGACCTC GTCTCGTTCA TCGGCGCCGC CCTGCTGTGG
TACTTCTCGA TCGGTCAGGT GCGAGGGTTC GCGTTCTTCC TGGGGCTCGC GACGGTGGCC
GACGTCGCCT CCGCCTGGTT CTTCACCCGA CCGCTGGTCC TCATCGTCGG CGACGCCCTC
GGCAAGACGC ATCCCCGATG GCTCGGTGTG GGCCCGGTGC AGCTGCGCGA ACAGGCACCC
GAGACGGCCA TCTTGCGGCC ACGGGCCAGA GTGAGTGGAA GTGAATCATG A
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| Protein sequence | MSKTRWLWSV VLSALVAVAA FIGVVELAHD GPILGLDLQG GASVVYRPAR PVSTAILNET
IGILRNRVDG LGIADPSIGQ QGNDIVVELP GVRDPRQALA LIGQTAVLQF RPVECTWAAY
APTKGQHVSA TRPPTSCPTS AAGLAAEAAV PTTPTQVALH SQTAVLDLRQ GTQVVGRYLV
GPALLDGNAI KSVYAAPDTT SSTGSWLVDF TLTPKASPLF NQIAKTFYQR QLAIVLDGTV
ISAPQITSTS FNGQGQITGN FTEAQANNLA LVLRYGALPV QLVQQTVQTV SPTLGASALR
AGLVAGVVGL IAVLLYTIVY YRVLGVVVLA GLVVTAAAVW AVVAYLGRAA QLTLDLSGVT
GLIVSIGLIT DSYIVFFERL KDEIREGSSI GYAVKAGFQK AFRTIIAADL VSFIGAALLW
YFSIGQVRGF AFFLGLATVA DVASAWFFTR PLVLIVGDAL GKTHPRWLGV GPVQLREQAP
ETAILRPRAR VSGSES
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