Gene Afer_0540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAfer_0540 
Symbol 
ID8322599 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidimicrobium ferrooxidans DSM 10331 
KingdomBacteria 
Replicon accessionNC_013124 
Strand- 
Start bp543362 
End bp543904 
Gene Length543 bp 
Protein Length180 aa 
Translation table11 
GC content67% 
IMG OID644951685 
ProductdTDP-4-dehydrorhamnose 35-epimerase related 
Protein accessionYP_003109174 
Protein GI256371350 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 
TIGRFAM ID[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCCACG GAGAGATCGC CGACGTGATC GTCATCCGCC CGACCGTCCA CGCCGACGCG 
CGCGGCGCGT TCCAAGAGAC CTATCGTCGC TCGTGGTTCC CGCTCGGTCG TGAGATGGTG 
CAGGGGTCGC GCTCCGACAA GGTCGCTGGC TCGCTCGTGG GCATGCACTA CCACCTCCAC 
CAGGCCGACT ACTGGTACGT CGTGCGGGGC ACGGCACAGG TGCTGCTCTA TGACTTTCGC 
CACGGATCGC GGACCGAGGG CACGACGTGG TCCCTGCTGA TGGGCGACGA GGACCCGATC 
GGCCTCTTCA TCCCCCCTGG GGTCGCCCAC GGTTTCGCCG CCCTCACGGA CCTGACGCTG 
ACCTACCTCG TCGACGGCTA CTACAACCCC GACGACGAAC TCGGACTCCG CTGGAACGAC 
CCCACGTTCC ACGGCCTCTG GCAGCTCGAT GACCCCGTCA TCTCCGAGCG CGACCAGACG 
AACCCACTCA TCGCACAGGT CCCACCGGAG CGGCGGCCCT CAGGTCGTCT GCGCACGGCC 
TAA
 
Protein sequence
MAHGEIADVI VIRPTVHADA RGAFQETYRR SWFPLGREMV QGSRSDKVAG SLVGMHYHLH 
QADYWYVVRG TAQVLLYDFR HGSRTEGTTW SLLMGDEDPI GLFIPPGVAH GFAALTDLTL 
TYLVDGYYNP DDELGLRWND PTFHGLWQLD DPVISERDQT NPLIAQVPPE RRPSGRLRTA