| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0522 |
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| Symbol | |
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| ID | 8322581 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013124 |
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| Strand | - |
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| Start bp | 524486 |
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| End bp | 526147 |
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| Gene Length | 1662 bp |
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| Protein Length | 553 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644951667 |
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| Product | Sigma 54 interacting domain protein |
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| Protein accession | YP_003109156 |
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| Protein GI | 256371332 |
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| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4987] ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components |
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| TIGRFAM ID | [TIGR02868] thiol reductant ABC exporter, CydC subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCTCG TCACGATCAT CCGCAACCAC CTCGACTCTG AGCGCAGACT GGTCGCTGGC
TACCTGGGTA CCTCACTCGC TGCTGCGCTC TCCCCAGCCA TCCTGTTCGC CTTCTCCGCC
TACCTCCTCG CCAAGTCCTC GCTCCGACCT GGCATCTTGA CGCTGGGGGT GGCCGTCGGT
TCGGTGCGCT TCTTCGCCCT CGCCCGAGGT GCCGGTCAGT ATGGAGAGCG CCTCCTCGGC
CATCGCCTCA CGCTGCGCCT CGTGCGCGTG GTTCGCGTCG CGCTCTATCG TGCCGTGGCT
GGGGCCGCAC CCCACAGGGT CCCGAGCGCG ATCGCCGGCA CGCTCTCGCG AGCTGCCACG
GGAGATCTCG ATGCGCTCTC CTCGCTGCTC CTGCGCATCG CGGCTCCCCT CGCCGGTGCG
GTGGGTGCAG GCCTCGTGGG CACGGTCGTG GCCTGGGTCT TCAACCCCGC CCTCGGAGTG
GTCCTCGCCC TCGGCCTCGT CGTCACGCTC GTCGTCGCGC CAGCGGCCGC GGCGCGGCTC
GGGCGAGCAC CGACCCGCGA ACTCGCCGCG ACCGCCGAAG CCGCCCACAC GATCGCACTC
GCCATCGCCG ACTCTGCTCC CGAGCGCGCC GGAACGCCGG GCGAGCACAC CCTCACCGAT
GAGCTCGCGG CCCACATCCG CAAGCTCGCC AGGCGTCGAC GGACCAACGC AGCGCTCGAG
CTGATCCCCG CCTCGCTCGC CGGTCTCGCC GAAGCACTGA CCATCGCCGC AACCGTCGCG
ATCGGTGCCG GGGCGATCGC GCACCACCAC CTCGAGGCCG TGGAGCTCGC CGTCGTGCCG
TTCCTCGCCC TCGGGCTCTT CGAGGCGACG AGCGGCATCG GCGTGAGCGC GACCCATCTC
GCGAGCGAGC TCGCCTCGTC CCGACGCCTC GACTCGGTCC TCGCGCTCCG AGGTCGCGAC
CAGCCAGCGA ACACTACGCC CCTGCCCGAC GGTCCCCTCG CCATCGACGT CGAGGACGTG
AGCTTCTCCT ACCCTGGCGC CACCACCGCG ATCCTCGATC GCCTCAGCCT CTCGATCCCT
CCAAGAGGTC GGCTCCTCGT CGTCGGTGAG AGCGGGGCTG GCAAGTCGAC GCTCGTCGGT
CTGCTGCGAG CCGCATGGGA GCCCACCCGT GGCACGATCC GCCTCGGCGG CGTCGACACG
CGCCAGCTCA CCGAGTCGAC CGTGGCGCAC CACGTCGGCT ACGTCCCCCA GGAAGCGTGG
GTCTTCGACG CGACGCTCGC GGCGAACCTC CGGCTCGCCC GCCCCGACGC ATCCGACGCC
GACCTCGTCC GAGCGCTCGG CGACGTGGGA CTCGCACCGC TGCTCGCGCG ACTACCCGAC
GGGCTCCAAA CGCGCCTCGC CCACGACGCC GTCTCCTCGG GCGAGGCACA GCGCATCGGA
CTCGCTCGCC TGCTGCTCGC CGACCAGCAC ACGTGGATCC TCGACGAGCC GACCGCCAAC
GTCGACGGCG AGACCGAGGA TGATCTCGTC GCACTTCTCG CCCGGCTCGC CATCGATCGA
ACCCTGGTCG TGGTGACGCA CGCCGAACGC GTCGTCGAGG GACTCGCACA CGGGGCCGAG
GTCCTCGAGT TGGCGAACCA CCGCGGCCAG AGCGCGCCGT AG
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| Protein sequence | MNLVTIIRNH LDSERRLVAG YLGTSLAAAL SPAILFAFSA YLLAKSSLRP GILTLGVAVG
SVRFFALARG AGQYGERLLG HRLTLRLVRV VRVALYRAVA GAAPHRVPSA IAGTLSRAAT
GDLDALSSLL LRIAAPLAGA VGAGLVGTVV AWVFNPALGV VLALGLVVTL VVAPAAAARL
GRAPTRELAA TAEAAHTIAL AIADSAPERA GTPGEHTLTD ELAAHIRKLA RRRRTNAALE
LIPASLAGLA EALTIAATVA IGAGAIAHHH LEAVELAVVP FLALGLFEAT SGIGVSATHL
ASELASSRRL DSVLALRGRD QPANTTPLPD GPLAIDVEDV SFSYPGATTA ILDRLSLSIP
PRGRLLVVGE SGAGKSTLVG LLRAAWEPTR GTIRLGGVDT RQLTESTVAH HVGYVPQEAW
VFDATLAANL RLARPDASDA DLVRALGDVG LAPLLARLPD GLQTRLAHDA VSSGEAQRIG
LARLLLADQH TWILDEPTAN VDGETEDDLV ALLARLAIDR TLVVVTHAER VVEGLAHGAE
VLELANHRGQ SAP
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