| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Adeg_0387 |
|---|
| Symbol | |
|---|
| ID | 8490353 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ammonifex degensii KC4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013385 |
|---|
| Strand | + |
|---|
| Start bp | 396214 |
|---|
| End bp | 397494 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 646358410 |
|---|
| Product | 2-hydroxyglutaryl-CoA dehydratase D-component |
|---|
| Protein accession | YP_003238391 |
|---|
| Protein GI | 260892294 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1775] Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGATT ACGAGTCCTT GTGGAGCGAG TTGGGGATTG ACCTAAAGCC TCATGCCGAG
TTGCTCGAGG CCCTGTTACC TCTCTACCAG GAAGTTTACC TTTCTCAGAA AAACCGCCCC
CGGGGCATGG AGTATTTCGA TTTCGTCGTC GGCGAAATTC ACGGCCTGCG GGTGCAGGAA
CTTAACGACT TCCGCCGGCA GGGCGGCAAA GTGGTGGGGA CCTTCTGCAT CTACGTGCCG
GAGGAACTCG TGCTGGCGGC TGGGGGAGTC TATGTCGGCC TTTGTGCCGG GGTGGAGGTG
GGTACGGCGC AGGTGGAAGC CGTGCTTCCT CGCAACATCT GCCCCTTAAT CAAGTCCTTC
ATGGGCTTCA AGCTTGCCCG TCTCTGCCCC TACTTCGAGT CCTGCGATCT TTTGGTCGGG
GAGACCACCT GTGACGGCAA AAAGAAAACT TTCGAGATTC TGGCCGACTA CGCTCCCGTC
CACGTGATGG AGGTACCTCA GAAGAAGGAA GCGCCGGATC AGGAACTCTG GTTAGCGGAA
ATAAATAAGC TGGTAGCCCG GCTGGAAGAG CTTACCGGCA AGAAGGTGAC TTATGAGAGC
CTGCGGGAGG CTATACGGCA GCTCAACGCC AAGCGAAGGG CGCTTAGGCG TCTGGCCGAG
CTACGCCGGG CCGACCCGCC GCCCATAAGC GGACTGGACG CCCTGCTCAT TTTCCAGATC
GCCTTTTATG ACGACGTGGA GCGGTTCACG GAAAAGGTCA ACGCCCTCTG CGATGAACTG
GAGGAGAGGG TACGTCAGGG TGTGGGAGTG GTTCCGCCCG GAACCCCGCG GCTTCTGGTG
ACCGGCACCC CCATGGCCAT ACCCAACTGG AAACTGCCCC ATCTCGCAGA GACCAGCGGG
GCGGTAATCG TGGCTGAGGA GCTTTGCACT GGATACCGTT ACTTCCAGAA TCTTACCGAG
GAAGAAGGTG GTTCTCTGGA GGAGCTCTTA GTCAACGTGG CCAGGCGGCA TCTGGCTCCC
CACTGTGCCT GTTTCACTCC CAACGGCGGG CGCTTGGAAG ACATCGAGAG GTTAATCCAG
GAGTACCGAG TGGACGGGGT GATAAGCTAT GTCCTTTCCT TCTGCGATCC CTACGCGGTG
GAGCACTACC AGGTAGAAAA GTTCTTGAAG GCCAAAGGAG TACCGGTGCT GAAGGTGGAG
ACCGACTACA GCATGCAGGA TGCTGGACAG CTCAAGACCC GCATAGAGGC TTTTGTGGAG
ATGCTCAGGC AGAAAACTTA A
|
|---|
| Protein sequence | MPDYESLWSE LGIDLKPHAE LLEALLPLYQ EVYLSQKNRP RGMEYFDFVV GEIHGLRVQE
LNDFRRQGGK VVGTFCIYVP EELVLAAGGV YVGLCAGVEV GTAQVEAVLP RNICPLIKSF
MGFKLARLCP YFESCDLLVG ETTCDGKKKT FEILADYAPV HVMEVPQKKE APDQELWLAE
INKLVARLEE LTGKKVTYES LREAIRQLNA KRRALRRLAE LRRADPPPIS GLDALLIFQI
AFYDDVERFT EKVNALCDEL EERVRQGVGV VPPGTPRLLV TGTPMAIPNW KLPHLAETSG
AVIVAEELCT GYRYFQNLTE EEGGSLEELL VNVARRHLAP HCACFTPNGG RLEDIERLIQ
EYRVDGVISY VLSFCDPYAV EHYQVEKFLK AKGVPVLKVE TDYSMQDAGQ LKTRIEAFVE
MLRQKT
|
|---|
| |