| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acry_1059 |
|---|
| Symbol | |
|---|
| ID | 5162174 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidiphilium cryptum JF-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009484 |
|---|
| Strand | + |
|---|
| Start bp | 1180214 |
|---|
| End bp | 1182040 |
|---|
| Gene Length | 1827 bp |
|---|
| Protein Length | 608 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640552977 |
|---|
| Product | lytic transglycosylase, catalytic |
|---|
| Protein accession | YP_001234194 |
|---|
| Protein GI | 148260067 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGAGGGG CCGTTAAAAA GCTCTCCCGC CTAAGCGTCG CCCGGGCGTG CATCGTCACG
GCGGCGTTGT CCGTCGGTAT GCCCGCGATC GCACATGCGG CGCCGGCCGG ACTCAGGGGG
CCTTCGACCG ACAAGCAGGG CGCTGCATCG CGCCCGGAAT CCGTAGCGTA TGCGATCCCG
CGCTCGACGC CGGCGAACGG CGCCGAGGTG GTGCTCGCCC GCCCGCTCGC GCCGAGCGAC
GTGACGCTGT ATCGCCGGAT CTTCGCCGAT CAGGCCGCGG GGCGCGTGGC CGAGGCGGCG
GCGCTGATCC ACCGGCTCGA CAACGACATG CTGATGGGCC AGGTGCAGGC GCAGCTCTAT
CTCGGCCCCT ATCACCATTC GACGCCGCAT GAACTCGAGG CCTGGCTCAA GGCCTATGGC
GGCCAGCCCG GCACGAACCG CATCCGCGCG CTGCTGGCCA AGCGGTTGCC GCGCGGGGGC
CACATGCCGC CCGCAACGGT CGACTACCTG CCGGAGCCCG AAATCGTCCC CACCGGCGCG
GCGACGCCGC CGGCCGGAGG AGTCCGGGTG CCGATGCGCC TTGCCGGATA TGTGCAGCGC
CTGAGCGGCA GCGGCGAGAG CGGCCGCGCC ATCGGCCTGA TCCGGAACGA CAATCATATC
TCCTTCGCCC AAGGCGCGGC GCTGCGCGCG ATCGTCGCCC GTCAGGTCTT CGACCGCGGC
GATTACGAAC AGGCCCTTTC GATCGCCGCC GCCGCGGCCA AGGAAGGCGG CAACCGGGTG
TGGGACCCGG ATTTCGTCGC CGGCCTCGCC GCCTGGCGGC TGGGCCGGAT GTCCGAGGCG
CTGCCCTTCT TCGAGCACGC CGCCGAATCG CCCGATTGCG GGCCCGACCG GCACGCCGCC
GGCGCCTTCT GGGCCGCGCG CGCGGCACTC CGCCTTGGGC AGGCCGACGC CTATCTCGCC
TGGCTCGGCA AGGCGGCGAA CAATTCGGGC ACGTTCTACG GCATGCTCGC CGGACGGCTG
CTCGGCCGGG ATCTCGGCGG CAGCAGCCTT GCCGCCAGCC TGTCCGAAGC CGATGTCGAG
GCGGTCGCGG CGCAGCCGGA AGGCGCCCTC GCCTTCGCGC TGCTGCAGGT CGGCCGCGAC
AGCGATGCGG CGCTCGCCCT GCGCAGCCTG TGGCCGCAGA TCAAGTCCGA TCCCAATCTC
GGCCGCGCGG CACTGCGCGT CGCCGCCCGC GCCGGGCTGA TCGATGTCGC GGTGGCGCTC
ACCCGCGTCC TGCCGGGCAA CGAAATTGCC GGGGTGAAGC TGCCCCTGCC CGCCCTGCAT
CCGGCCGGCG GATTCAGCGT CGATCCCGCG CTGGTCTATG CGCTCGCCCG CACCGAATCC
GGCTTCAACC CGCGCGCCGT TTCCGTGGTC GGCGCGCGCG GGTTGATGCA GCTGATGCCG
GCGACCGCGC TCGCGATGGC GCACCGCTAC GGCATCGCCG ACCGGCTGGA CGATCCGGCG
GCCAACCTCG CGCTCGGCCA GTCCTATCTG CGCTACCTGG CGGCCCAGCC CGACGTGAAG
CGCAACCTGC TCGACATTCT GGCCAGCTAC AATGCCGGTC CGGTCGCCGC GTCGAAATGG
GTCGACACGA TCAAGGACGG CGGCGATCCG CTGATCTTCA TCGAATCGAT CCCGAACGCG
GCCACCCGCC GCTTCGTCCA GCAGGTGCTG GCCGACAGCT GGATCTATGC CGAGCAGATC
GGCGACGTGC CGGCGAGCCT CACCGCCTTG GCCGAAGGAC ACGCGCCGCA GCTGCAGGAT
TACGGCACCG CGGTCGCCGA CCGCTGA
|
|---|
| Protein sequence | MRGAVKKLSR LSVARACIVT AALSVGMPAI AHAAPAGLRG PSTDKQGAAS RPESVAYAIP
RSTPANGAEV VLARPLAPSD VTLYRRIFAD QAAGRVAEAA ALIHRLDNDM LMGQVQAQLY
LGPYHHSTPH ELEAWLKAYG GQPGTNRIRA LLAKRLPRGG HMPPATVDYL PEPEIVPTGA
ATPPAGGVRV PMRLAGYVQR LSGSGESGRA IGLIRNDNHI SFAQGAALRA IVARQVFDRG
DYEQALSIAA AAAKEGGNRV WDPDFVAGLA AWRLGRMSEA LPFFEHAAES PDCGPDRHAA
GAFWAARAAL RLGQADAYLA WLGKAANNSG TFYGMLAGRL LGRDLGGSSL AASLSEADVE
AVAAQPEGAL AFALLQVGRD SDAALALRSL WPQIKSDPNL GRAALRVAAR AGLIDVAVAL
TRVLPGNEIA GVKLPLPALH PAGGFSVDPA LVYALARTES GFNPRAVSVV GARGLMQLMP
ATALAMAHRY GIADRLDDPA ANLALGQSYL RYLAAQPDVK RNLLDILASY NAGPVAASKW
VDTIKDGGDP LIFIESIPNA ATRRFVQQVL ADSWIYAEQI GDVPASLTAL AEGHAPQLQD
YGTAVADR
|
|---|
| |