| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_4070 |
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| Symbol | |
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| ID | 4072492 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Koribacter versatilis Ellin345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008009 |
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| Strand | + |
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| Start bp | 4816746 |
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| End bp | 4817963 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637986101 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_593144 |
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| Protein GI | 94971096 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.409958 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.154431 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACTCG AACCTGAGCG TTCCATTCGT CTCGCTCGCG AAATTCAACC ATTCAGAAAA
GCCGCACTCA CGCGGCTGGG CTTCGGTGCG GCAATCCCGA CTCTATTGCT GGTGCTCACT
CTCGGGTGCG ACAAGAAAGA GGAGGCAGTT GCTCCGCCTC CACCCGACGT GCAAGTGACC
GGCGTCGTGC AGCAGGACGT GCCCCTGTAT GGCGAGTGGG TCGCCACCCT CGATGGTTTT
GTGAACGCAC AGATCGCGCC ACAAGTCAGC GGCTACCTGA TGAAACAGAA CTACCGAGAG
GGTTCGGTGG TGAAAAAAGG CGACGTGCTC TTCGAGATCG ACCCACGGCC CTTTGAAGCC
GCGCTCGACC AGGCAAAGGG CAATTTCGCC GAAACCCAAG CCAAGCTCGG CAAGACTGAG
CTCGACGTAA AGCGCGACAC GCCACTGGCG GCGCAGAGCG CGATTCCGCA AGCGCAACTC
GACAACGACA TTCAAGCGAA CGAAGCCGCG AAAGCCATGA TCGTGGCGTC GCAAGCACAA
GTGCAGCAAG CGGAGTTGAA CGTCGGCTTC ACCAAAGTCC GCTCGCTGGT GGACGGAATC
GCCGGACTCG CAAAAGGACA GATTGGCGAC CTCGTCGGCC CGACAACGAT CCTCACCACC
GTTTCGCAAG TTTCGCCGAT CAAGGCTTAC GTCTCGATCA GTGAGCAGGA ATACCTTCGC
GCCGCGCAAA GAATCAGCAT GGTGTCTTCC GGACAACTCA GCCTCGACAA GATGCCGAGG
AACCTCGAAC TGATCCTCTC CGATGGCACG ACCTACAAAT ACAAGGGCTA CTTCGTGGTT
GCCGATCGCC AGGTTGATCT CAAGACCGGC ACGATTCGTC TCGCCGCTGC TTTCGACAAT
CCAGAAGGCA TCCTTCGGCC AGGACAATTC GCGCGCCTAC GCGTTGAAAC CCGTGTTGCG
AAGGACGCGC TCCTCGTCCC GCAGCGCGCG GTCGTCGAGA CCCAGGGCTC GTACAGCGTC
GTCGTTGTCG GTTCCGACAG CAAGGCAAGC ATTCGCCCGG TAAAGACCGG CGAGCGCGTC
GGCGAGTTGT GGATCATCAC CGAGGGCCTC AAGCCAGGCG AACAGGTCAT CGTCGAAGGC
ATGCAGAAAG CGAAGGAAGG CAGCCCGGTC AAAGCGGTAC AGGCGCAAGC GGAACCCACC
AAGGCCCAAG GAGACTAA
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| Protein sequence | MSLEPERSIR LAREIQPFRK AALTRLGFGA AIPTLLLVLT LGCDKKEEAV APPPPDVQVT
GVVQQDVPLY GEWVATLDGF VNAQIAPQVS GYLMKQNYRE GSVVKKGDVL FEIDPRPFEA
ALDQAKGNFA ETQAKLGKTE LDVKRDTPLA AQSAIPQAQL DNDIQANEAA KAMIVASQAQ
VQQAELNVGF TKVRSLVDGI AGLAKGQIGD LVGPTTILTT VSQVSPIKAY VSISEQEYLR
AAQRISMVSS GQLSLDKMPR NLELILSDGT TYKYKGYFVV ADRQVDLKTG TIRLAAAFDN
PEGILRPGQF ARLRVETRVA KDALLVPQRA VVETQGSYSV VVVGSDSKAS IRPVKTGERV
GELWIITEGL KPGEQVIVEG MQKAKEGSPV KAVQAQAEPT KAQGD
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