| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_3679 |
|---|
| Symbol | |
|---|
| ID | 4072282 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 4349498 |
|---|
| End bp | 4350913 |
|---|
| Gene Length | 1416 bp |
|---|
| Protein Length | 471 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637985702 |
|---|
| Product | glutamate synthase (NADH) small subunit |
|---|
| Protein accession | YP_592754 |
|---|
| Protein GI | 94970706 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01317] glutamate synthases, NADH/NADPH, small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.15931 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTAAGA CCACCGGGTT CCTCGAATAC ACCCGCGAAC TCCCGCAGCG CCGGCCCGTG
ATCGAGCGCA TCAACGACTG GTTCGAGATC TACCAGGACT TCCCTGAGCA GAGCCTTCAA
GAGCAGGGCG CACGCTGCAT GGATTGCGGT GTGCCCTTCT GTCACACCGG ATGCCCGGTC
AACAACAACA TTCCCAACTG GAATGACCTC GTGTACCGCG GACGCTGGCG CGAGGCGGTT
CGCCGTCTCC ACGCCACGAA CAATTTTCCG GAGTTCACCG GACGCATCTG CCCCGCGCCC
TGCGAAGCTT CCTGCGTTCT CGGCATCAAT CAGCCGCCGG TCACCATCAA GCAGATCGAG
AAAACGATCA TCGAGCGTGC CTTCGCCCAA GGATGGATCA ACCCCGAGCC GCCGAAGGCC
GAAACCGGCA AGAAGGTCGT GGTCATCGGC TCAGGCCCCG CTGGCCTCGC AGCCGCGCAG
CAACTCCGCC GCGCCGGACA CACCGTCACC GTCTACGAGA AGGCTGACCA CGTTGGTGGT
CTGCTTCGCT ATGGCATCCC GAACTTCAAG CTCGAGAAGC ACGTTGTGGA TCGTCGCGTC
GCCCAGATGG AAGCCGAGGG CGTTCAGTTC GTGACCAGCG CACACGTCGG CGTCAACGTC
TCGGTCGAGC AGCTTCGATC GGAACACGAT GTGGTGTTGC TCTCCGGCGG CGCTGAGCAG
CCGCGCGACC TCTCCGTTCC CGGCCGCGAA CTCAAGGGTA TTCACTTTGC GATGGAGTTC
CTGCCACAAC AAAACCGGCG TAACTCCGGT CTAGCTGTGA ACGACAAAGA GATCCTCGCG
ACGGGAAAGC ATGTCGTCAT CATCGGCGGC GGCGATACCG GAGCCGATTG TCTCGGCACT
TCGCATCGCC AGGGTGCAAA GTCTGTCCGT CAATACGAGA TCATGCCGAT GCCGCCTCAG
GAGCGCGCGG GGCAGACGCC GTGGCCGCTA TGGCCGCTGC AACTGCGTAC CGAGAGCTCG
CACGAAGAAG GCGGCGATCG CCAGTGGTCG GTCGCAACCG CGCAATTCAC CGGCGATGAA
CATGGCAACG TGAAACAACT GCACGGCGTT CAGATCGGTC CACCGCCGAA ATTCGAACCG
ATCGCCGGCA CCGAGTTCGT CGTGGAAGCC GATCTCGTGT TGCTTGCGAT GGGCTTCACC
GGCCCGGTGC GCAACGGCAT GATCGAGCAA CTCGGCGTTG CCCTCGATCC GCGCGGTAAC
GTGCAGACCG ACAACAACTC CATGACCTCG GTCACAGGCG TCTTTGCCGC GGGCGATATG
CGACGCGGCC AATCGCTGGT GGTATGGGCC ATCGCCGAAG GCCGTAAGGC CGCTGCGGGC
ATCGACGCAT ACCTCCACGC GAACGGCGCC TCCTAA
|
|---|
| Protein sequence | MGKTTGFLEY TRELPQRRPV IERINDWFEI YQDFPEQSLQ EQGARCMDCG VPFCHTGCPV
NNNIPNWNDL VYRGRWREAV RRLHATNNFP EFTGRICPAP CEASCVLGIN QPPVTIKQIE
KTIIERAFAQ GWINPEPPKA ETGKKVVVIG SGPAGLAAAQ QLRRAGHTVT VYEKADHVGG
LLRYGIPNFK LEKHVVDRRV AQMEAEGVQF VTSAHVGVNV SVEQLRSEHD VVLLSGGAEQ
PRDLSVPGRE LKGIHFAMEF LPQQNRRNSG LAVNDKEILA TGKHVVIIGG GDTGADCLGT
SHRQGAKSVR QYEIMPMPPQ ERAGQTPWPL WPLQLRTESS HEEGGDRQWS VATAQFTGDE
HGNVKQLHGV QIGPPPKFEP IAGTEFVVEA DLVLLAMGFT GPVRNGMIEQ LGVALDPRGN
VQTDNNSMTS VTGVFAAGDM RRGQSLVVWA IAEGRKAAAG IDAYLHANGA S
|
|---|
| |