| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_3615 |
|---|
| Symbol | |
|---|
| ID | 4070135 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | + |
|---|
| Start bp | 4277040 |
|---|
| End bp | 4278101 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637985638 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_592690 |
|---|
| Protein GI | 94970642 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.242924 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.313882 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACTACC GGCCCCTTTC CCTTCTCCTC GGTATCGTGG TCGCAACCAC GGCCATCGGT
ACCGCCCAGA TTGAAGAGTA CCGTACCGGC AGCGATTCTC CCGCTGCAGA CACCTTAACG
CACTCGACGT TGACCGGTAC GGTGACTTCC GCCGACGGGT CGCCTCTCAA TAATATCCGC
ATTGAGGTTC GCAGGATCGG GATCGGCTCA CCGGCGGACG CAACTTACAG CCATGTGAAC
GGCTCGTTCG ACTTCGCGAA CCTGCGGCCG GGTTCCTACG AAGTGGTGGC GATTGACGGT
GTGATGGAGG CGCGGGAACA GTTCATCGTA CAGAGCCAGT TGGTGTCTCT CAGCCTGCGG
ATGCCGGTAA CCCGGTCAGC AGCACCGACC CGCGGCACGA TTTCTGTAGC GGAATTAAAG
GTCCCCGATA AAGCCAAGCA CCTGCTCGAC AAGGCGCAAG GGGCGCTGTC GAAGGGTCAC
AGCGACGAAG CCGAGAAGCA GGTAGAAGAG GCGCTGCAGG CAGCGCCAGA TTATGCGGCC
GCACTGTCAT TCCGCGCCGC GCTGAAACTT ACCCGCAACG ATACGCAATC GGCGCTCGAT
GACCTCGACC ACGCGGTAAA GGCCGATCCG AATTTTGCGC AGGCTTACAT GTTGCTGGGA
GCGGCGTTTA ACCAGCTAGG CCGCTACGAC GAGGCGCTCC GCAGCTTGGA TCGTGGCTCG
ATGTATGACC CTAAGTCATG GCAGGTTTCC TACGAGATGT CGAAGGCGTG GATGGGCAAG
CATGATTACG TTCATGCCAT CCAGCAGCTG AACCGGACGG AGTCGTTGGG CGCAGTGAGA
ATCGCGGGGC AGGTGCATCT GCTCAAGGGC TACGCGTTCA TGGGCCAGAA ACAATTTGAG
CAGGCACAGA CGGAACTGCA GGCGTACTTA ACGTCCGAAC CTCAGAGCAA GATGGCGGGA
TCGGTTCGCG CTGCCCTTGC ACAGATCCAG ACCCAGATGG CGCAGAGTCC TGCGGCGTTG
ACGTTGCCGA CGATGACGGG GATCTTCGCG CAGGCGCACT GA
|
|---|
| Protein sequence | MYYRPLSLLL GIVVATTAIG TAQIEEYRTG SDSPAADTLT HSTLTGTVTS ADGSPLNNIR
IEVRRIGIGS PADATYSHVN GSFDFANLRP GSYEVVAIDG VMEAREQFIV QSQLVSLSLR
MPVTRSAAPT RGTISVAELK VPDKAKHLLD KAQGALSKGH SDEAEKQVEE ALQAAPDYAA
ALSFRAALKL TRNDTQSALD DLDHAVKADP NFAQAYMLLG AAFNQLGRYD EALRSLDRGS
MYDPKSWQVS YEMSKAWMGK HDYVHAIQQL NRTESLGAVR IAGQVHLLKG YAFMGQKQFE
QAQTELQAYL TSEPQSKMAG SVRAALAQIQ TQMAQSPAAL TLPTMTGIFA QAH
|
|---|
| |