| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_3291 |
|---|
| Symbol | |
|---|
| ID | 4072703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 3897221 |
|---|
| End bp | 3897997 |
|---|
| Gene Length | 777 bp |
|---|
| Protein Length | 258 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637985312 |
|---|
| Product | LytR/AlgR family transcriptional regulator |
|---|
| Protein accession | YP_592366 |
|---|
| Protein GI | 94970318 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.393667 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCC GAACCTTGAT CGTGGACGAC GAACCTCTGG CAAGACGACG AATACTGTCT
CTACTTCAGC CTGACCCGTC GTTCGACATT CTCGGCGAGT GCGGGAATGG CAAAGACGCA
GCGGACAAGA TCTGCGAACT CAAGCCTGAC CTCGTCTTTC TCGACGTGCA GATGCCAAAG
CTCGACGGCT TCGGTGTGCT CGAGGCGGTT GCGACCACTC ACCTCCCACA AATCATTTTT
GTTACAGCTT TCGACCAGTA CGCGGTGAAG GCCTTCGACG CCCACGCGGT CGACTATCTC
CTCAAGCCTT TTAAGCAGGA GCGTTTTATG GATGCGGTTT TACGGGCCAA GGCACAATTC
CAGCAAGCCG CCGCGCCGGT GAACGGGAAT GCGCCGGAAG AGAACAACAA GCTGCTGTCG
CTGTTGCGGC ACGTGAATAC CGATAGCGAT CGTCTGGTGG TGCGCAGTGG CGGCAAGGTT
GTCTTCCTGC GCGCATCTGA AGTCGAGTGG ATCGAAGCGG CGGCGAACTA CATCAAGCTG
TACTCGCAGC AAAGGGTGTT CACTGTCCGC GAGAAGATCA GCTCGCTGGA AGAAGCGCTG
CCGAATGGGA AGTTCATGCG CATTCATCGC TCGGTGATCG TGAATTTGAG CATGGTGCAG
GAGATCCAGC CATGTGGCGG CGGCGAGTTC GTGGTCATCC TGCGCAACGG ACGCGAACTG
CCACTGGGAC GCACCTATCG CTCGAAGATT GACGAGCTAG TACACCAACT TAGGTAA
|
|---|
| Protein sequence | MKIRTLIVDD EPLARRRILS LLQPDPSFDI LGECGNGKDA ADKICELKPD LVFLDVQMPK
LDGFGVLEAV ATTHLPQIIF VTAFDQYAVK AFDAHAVDYL LKPFKQERFM DAVLRAKAQF
QQAAAPVNGN APEENNKLLS LLRHVNTDSD RLVVRSGGKV VFLRASEVEW IEAAANYIKL
YSQQRVFTVR EKISSLEEAL PNGKFMRIHR SVIVNLSMVQ EIQPCGGGEF VVILRNGREL
PLGRTYRSKI DELVHQLR
|
|---|
| |