| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_1740 |
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| Symbol | |
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| ID | 4072007 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Koribacter versatilis Ellin345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008009 |
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| Strand | + |
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| Start bp | 2111617 |
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| End bp | 2113590 |
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| Gene Length | 1974 bp |
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| Protein Length | 657 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637983748 |
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| Product | squalene cyclase |
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| Protein accession | YP_590815 |
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| Protein GI | 94968767 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGACA GACATATTCA ATCGGAAATA ACGTTCGGCA AGATTGACGG CATCCGCGAG
CGCATTCAAC AGGCGATGGA TGCCGCCAAA CGGTATCTCT TCTCGAAGCA GGATCCCGAA
GGTTTCTGGT GCGGTGAACT CGAAGCCGAC ACCACGCTGC AATCCGATTA CATCGTGATG
CATACACTGC TCGGCACCGG CGATCCGGTG AAGATGCAGA AGGCCGGGAA GCAGATCCTG
CAGCACCAGA ATCCAGACGG CGGGTGGAAT ATCTACCCCG ACGGCCCTTC GAACATCAGC
GCGGCTGTGA AGGCGTATTT CTCGCTCAAG CTGATCGGTC ACAAGCCCGA TGAGCCGGAG
ATGACGAAGG CCCGGGAGTG GATCCTGGCC CATGGCGGCG TGACTGCCTG CAACACATTT
TCGAAGATGT ATCTCTGCTT TTTCGGCCAG TACGACTACG ACACGGTTCC AGCTATCCCG
CCGGAGATCG TGCTCTTTCC GAACTGGTTC TGGTTCAACC TGTACGAGAT ATCGTCGTGG
TCGCGCGGCA TTCTTGTCCC GCTCGCAATC TGCTACGCGA AAAAACCATT CAAGAAAATT
CCCGACGAAG CAAACATCGA CGAGCTGTTC GTCGAAGGGC GTCACGCCAA TTTGCATTTG
ACCTGGGACA AGAAGCCTTT TTCGTGGCGG AACTTCTTCC TCGTGCTTAA CAACATGGTG
CACTTTTTCG AGCGCGTGCA CGTGCGTCCG CTGCGCAAGC TCGCAATGAA GCGGGCAGAG
AAATGGATGC TCGAGCGCCT CGAGATGAGT GACGGACTCG GTGGGATCTA TCCTGCGATT
TTGAATTCAA TCATTGCGCT GCGCGCACTT GGATATTCCA CGGACGATCC GCAGGTGATC
CGTGCGATGG ACGAGTTCGA GAAGCTCGGT ATCGAGGAAG ACGACACATT CCGCATGCAA
CCGTGCATGT CACCAGTGTG GGACACGGCA TACGCGCTGT ATGCGCTTGG CGAAGCCGGC
GTGCCGGGCA GCGATCCACG CATGCAAAAG GCCGCTGAGT GGATGCTGAA GAAGCAGGTG
ACGCACAAGG GCGATTGGGC GGTGAAAGTC CGCAACGTGC AGCCGGGTGG CTGGTACTTC
GAGTTCAATA ACGAGTTCTA TCCCGACGTG GACGACACCG CTCAGGTGAT TCTGTCGCTG
AACCACGTGC GGACATCCAA CGAACGCTAC CAGGACGACA CCGTCAAGCG CGCTCTCGAC
TGGCAACTCG CCATGCAGTG CAAGAACGGC GGCTGGGCCT CGTTTGATAA AGACAACAAC
AAGATGGTCT TCCAGTACAT CCCGTTCGCT GACCACAACG CCATGCTCGA TCCGGCGACG
GTCGACATTA CGGGACGCGT CCTGGAAGCC CTCTCGCATC ACGGGTACTC GCTGAAGGAC
AAAGTTGTGC AGCGCGCCGT CAAGTTCATT CAGAGTGAGC AAGAACCTGA CGGTTCCTGG
TTTGGTCGCT GGGGCGTGAA CTACATCTAC GGCACCATGC TTTGCCTCCG CGGACTCGCG
GCGGTCGGCG TGGATCACCA CGAACCCATG GTGCAACAGG CAGCCGAATG GTTGCGTATG
GTGCAGAACC CCGACGGTGG TTGGGGCGAA AGCGTGGGCT CATACGACGA TCCGAAATTG
CGCGGGCAGG GACCGAGCAC GGCCTCGCAG ACAGCATGGG CTGTAATGGG GTTGCTGGCG
GCGAATGATC TGCGGAGCGA TTCGGTGACG CGCGGTATCG CGTGGCTGCT TGAGAACCAA
AAGCCGAATG GATCTTGGTG GGAAAAGTGG ATCACTGGCA CCGGTTTCCC GCGCGTGTTC
TACCTCAAAT ACACCATGTA CGCCGAGTAT TTCCCGCTCA TCGCTTTTGC CGAGTATCTG
CGGCGTTTGA ATACGCCGCT CGATGAGAAG GTGAAGCTCG GACCACAGGC GTAG
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| Protein sequence | MDDRHIQSEI TFGKIDGIRE RIQQAMDAAK RYLFSKQDPE GFWCGELEAD TTLQSDYIVM
HTLLGTGDPV KMQKAGKQIL QHQNPDGGWN IYPDGPSNIS AAVKAYFSLK LIGHKPDEPE
MTKAREWILA HGGVTACNTF SKMYLCFFGQ YDYDTVPAIP PEIVLFPNWF WFNLYEISSW
SRGILVPLAI CYAKKPFKKI PDEANIDELF VEGRHANLHL TWDKKPFSWR NFFLVLNNMV
HFFERVHVRP LRKLAMKRAE KWMLERLEMS DGLGGIYPAI LNSIIALRAL GYSTDDPQVI
RAMDEFEKLG IEEDDTFRMQ PCMSPVWDTA YALYALGEAG VPGSDPRMQK AAEWMLKKQV
THKGDWAVKV RNVQPGGWYF EFNNEFYPDV DDTAQVILSL NHVRTSNERY QDDTVKRALD
WQLAMQCKNG GWASFDKDNN KMVFQYIPFA DHNAMLDPAT VDITGRVLEA LSHHGYSLKD
KVVQRAVKFI QSEQEPDGSW FGRWGVNYIY GTMLCLRGLA AVGVDHHEPM VQQAAEWLRM
VQNPDGGWGE SVGSYDDPKL RGQGPSTASQ TAWAVMGLLA ANDLRSDSVT RGIAWLLENQ
KPNGSWWEKW ITGTGFPRVF YLKYTMYAEY FPLIAFAEYL RRLNTPLDEK VKLGPQA
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