Gene Acid345_1288 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAcid345_1288 
Symbol 
ID4071360 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Koribacter versatilis Ellin345 
KingdomBacteria 
Replicon accessionNC_008009 
Strand
Start bp1565933 
End bp1566616 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content61% 
IMG OID637983297 
ProductNADH (or F420H2) dehydrogenase, subunit C 
Protein accessionYP_590364 
Protein GI94968316 
COG category[C] Energy production and conversion 
COG ID[COG0852] NADH:ubiquinone oxidoreductase 27 kD subunit 
TIGRFAM ID[TIGR01961] NADH (or F420H2) dehydrogenase, subunit C 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.924033 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.845056 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCAGACG AGAAATCTGA ACTGGACAAG ACTGCGGCGC CGAAGGTTGA GGGCGCGGCA 
GAAGTTCCGA AAGCTGTAGT CGCCGCGCCT ACTCCCGAAA AACCAGCAGC AGCCGCACCG
GCAAAGCCTG CGGCTCCGGC AGCAGCCAAG CCCCCAGCGC CTCCCGCCCC GCCGAAGCCA
GCGCCGAAGC CGTGGGAAAG CGAATTTGTT GCAAGTTTGA AGCGCCAGTA CGGCTCGGGG
ATTCGTGAAG CTTCGATTTA CCTGAAGGAC CAGTACCTGG TGGTGGACAA GGGCATCGCG
TTCGAGATCC TGAAGCGGAT GCGCGAAGAC GAAGGGTTCG ATTACTGCGT GGACGTGACC
GCGCTGCATT GGCCGAAGCG CGAAGAGCAG TTCGACATGG TTTACATCCT GTATTCGTTC
GCGAAAAACG AGCGGGTGCG CGTCGAGGTC CCGATTAAAG ACGGCGATAA GGTTCGCTCG
GTGTACAGCC TGTGGCCCAC GGCCGACTGG CTGGAGCGCG AGGTCTTCGA CATGTTCGGG
ATCGAGTTCA CGGAGCATCC GGGGCTGAAG CGCATTTTGC TGCCGGACGA GTGGACCGGC
TTCCCGCTGC GCAAGGACTA CGGCATTCGC CAGCAGGACC AGCAGTGGGT GAACAAGTTT
GTCGGAATCG AGAGCGGACA ATGA
 
Protein sequence
MPDEKSELDK TAAPKVEGAA EVPKAVVAAP TPEKPAAAAP AKPAAPAAAK PPAPPAPPKP 
APKPWESEFV ASLKRQYGSG IREASIYLKD QYLVVDKGIA FEILKRMRED EGFDYCVDVT
ALHWPKREEQ FDMVYILYSF AKNERVRVEV PIKDGDKVRS VYSLWPTADW LEREVFDMFG
IEFTEHPGLK RILLPDEWTG FPLRKDYGIR QQDQQWVNKF VGIESGQ