| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_0560 |
|---|
| Symbol | |
|---|
| ID | 4073049 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 688548 |
|---|
| End bp | 689606 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637982565 |
|---|
| Product | TonB-like protein |
|---|
| Protein accession | YP_589639 |
|---|
| Protein GI | 94967591 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
|---|
| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000337767 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.21091 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGGGCA AACGCAGGAC TACAGAAGCC TTAAGTGTAA CGAACCCAAG CAGGCCATGT
CAACGCACAC TGCCGCCGCA ACACTGCTTC CGGACCCATC GCGGGCCCGT TTCAAGGCTT
CAAGGAATTG TAGCGGAAAA CAGAGTACAA ACCAAGGATT TCCGTCCGTA CAATACGCCT
GTCGTGAAAC GGCTCCCTGG CATCCTCGCC CTCCTCGCGC TTCTTGCAAC TGTTCCCGCG
TTCCCGCAAC CTTCCGCAAA CGACCAGTCC CTGCCTTTCG GAAACATACT CAAAAATAAG
CTCCTGATCC TCCGCGGTTT TTACGGCTCC GAAAAGCTGG AGTTCGACGC CGATGGCCGC
GCCTTACCCG ACGCGCGACT CGGATTCGGC CCAACCGATG GCACATTTCA CGTCATCTCC
ATCCATTACC CGCCGGGCAA AGTAGTGCTC GAAGGCGATC TGCCGCTCCT TAACTACCAT
CTCGACACCA ACTCCGTTTC CTACGCCGAA GGCATCGTTA AGCGATCAGT CACAATCGAC
GTTCCAGACT CCACCGACCA GAACGCGGTC GAACACGCGC TCTGGAGCGT CTTCTATCGC
CCGGGAAAAT CGATCACGCC CTCGTGCACT GCCGAAGAAA AAGCGGATTT CGCAGCGCAT
ATGCGTCGTG AACGCGAGCG ACAGGGCAAG AAACCGAAGC AACAAGCCGA GAGTTCCGGC
CCGATTCCGC CAAGTGGAAT CTGCTTTCCC CTCGGCGAAC ATGTCCTTCA CCACGTTGGA
AAAACTGAGG GAGTTTCAGC GCCGATCTCC ATTCACACTC CCGACCCCAG CTTCCCAGAC
AACGCGCCCA AGGGAGTTTT CGATGACACC GTTAATGTTG CCGCCATCAT CGACGAATCT
GGAAGGGTCA CGACGATGAC CGTCGTCAAG AGCCTCGGCC TTAGTTTCGA TCAAGTCGCG
GTAGCCAAAA TACGCACTTG GACAATGCAG CCCGCTCTGA TGAATGGAAA GCCCGTCGCC
GTTTCGGTCA CCATCGAAAT GCGCTTCAGC CGACATTGA
|
|---|
| Protein sequence | MTGKRRTTEA LSVTNPSRPC QRTLPPQHCF RTHRGPVSRL QGIVAENRVQ TKDFRPYNTP
VVKRLPGILA LLALLATVPA FPQPSANDQS LPFGNILKNK LLILRGFYGS EKLEFDADGR
ALPDARLGFG PTDGTFHVIS IHYPPGKVVL EGDLPLLNYH LDTNSVSYAE GIVKRSVTID
VPDSTDQNAV EHALWSVFYR PGKSITPSCT AEEKADFAAH MRRERERQGK KPKQQAESSG
PIPPSGICFP LGEHVLHHVG KTEGVSAPIS IHTPDPSFPD NAPKGVFDDT VNVAAIIDES
GRVTTMTVVK SLGLSFDQVA VAKIRTWTMQ PALMNGKPVA VSVTIEMRFS RH
|
|---|
| |