| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_0138 |
|---|
| Symbol | |
|---|
| ID | 4069723 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | + |
|---|
| Start bp | 146694 |
|---|
| End bp | 148019 |
|---|
| Gene Length | 1326 bp |
|---|
| Protein Length | 441 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637982138 |
|---|
| Product | (Uracil-5)-methyltransferase |
|---|
| Protein accession | YP_589217 |
|---|
| Protein GI | 94967169 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00300358 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGTGGAAC TGAAGATCGA AAAATTGATC TACGGCGGTG ATGGCCTAGC GCGCATGCAC
GATGCCAAGC TGGGGCGATC GAAGGCCGTG TTCCTGCCGT TTGTCGCGCC GGGTGAGACC
GTCGAAGCGA TCATTCGGGA GCAGAAGCCG GGATTCGCGC GGGCGCAGGC GGAGAAGGTG
CTTCAGCCTT CCGAGTTTCG GCAGACACCG CCGTGCCCTT ACTTCTTCAA ATGCGGTGGA
TGCCAATATC AACATTTGCA ATATGCCGAG CAGGTGAAGG CGAAGGCCCA GATCCTGGAA
GAGACGCTAT CGCGGACTGC GAAGCTTAAG CTCGAACAAC CAATTCAGAC GCACGCGGCC
GAGCCGCTGG GTTATCGCAA TCGAACGCGG ATGCGGGTGA GTCATGTGCC GCAGTTTGCG
ATTGGGTATT ACCGCTTCGG ATCGCATTCA TTGCTGCCGG TAGAGCAGTG TCCGATCAGT
TCCCCGCTGA TTAATCGGGT GCTGCAAGGG TTGTGGGCGG CGGGACGCGA AGAACGGATT
GCGCGCGAGG TGCGCGAGGT GCAGTTCTTC GCGAACCACG ACGATTCGCG GTTGCTGCTG
GAGTTGTACA TCGATCATCA CGCGGAGCCT GATGCATTGC AGCCGATGAT TGAAACGCTG
CGTGGGAAGA TGCCGGAGAT TGCCGGAGTC GCGGTGTTCC GGGGCGCACC GGCGGACGAC
AGCGAAGATC AACGCGCGCC GTTGACGCGG GCGAAGGCAT CGCCCGGAGT GTTCTTTGGC
GAGCGCTCGC TGAGATACAA GACGAAGCGG CATGAGTACC AGGTGAGTGC GGGAGCGTTC
TTCCAGACCA ACCGGTTCTT GCTCGACGAG ATGGCGGAGA CGGTAACGCG CGGGCACAGC
GGAAAGCTGG CCCTGGACTT GTATTCCGGT GGCGGGTTCT TTTCGCTGCC GTTGGCAGAC
CAGTTCGAGA AGGTGATCGC TGTGGAAGCT TCGGGACATT CGCAGGCGGA TTTGAAGACG
AATGCCTTGC GGAATGTGAA GGCCGTGCGC AGCGGGACCG AGGAGTTTTT GCGCGGTGAG
GGGCGGCAAT TGCGGCCGGA TTTGGTGGTC GTGGATCCGC CGCGGGCGGG GCTGGGGGAG
AAGACATCAC ATTTAATTGG TCGAATGTCC GTGGGACGTG TGACGTATGT CTCTTGCGAT
CCAGCCACGT TATCGCGTGA TATGAAGGTG CTGGTAGAAT CCGGATTCCG CGTGGAAGAG
GTGCATCTGT TCGACCTCTT TCCGCAGACC TACCATCTCG AAAGCGTGCT GCACCTGGTG
CGCTGA
|
|---|
| Protein sequence | MVELKIEKLI YGGDGLARMH DAKLGRSKAV FLPFVAPGET VEAIIREQKP GFARAQAEKV
LQPSEFRQTP PCPYFFKCGG CQYQHLQYAE QVKAKAQILE ETLSRTAKLK LEQPIQTHAA
EPLGYRNRTR MRVSHVPQFA IGYYRFGSHS LLPVEQCPIS SPLINRVLQG LWAAGREERI
AREVREVQFF ANHDDSRLLL ELYIDHHAEP DALQPMIETL RGKMPEIAGV AVFRGAPADD
SEDQRAPLTR AKASPGVFFG ERSLRYKTKR HEYQVSAGAF FQTNRFLLDE MAETVTRGHS
GKLALDLYSG GGFFSLPLAD QFEKVIAVEA SGHSQADLKT NALRNVKAVR SGTEEFLRGE
GRQLRPDLVV VDPPRAGLGE KTSHLIGRMS VGRVTYVSCD PATLSRDMKV LVESGFRVEE
VHLFDLFPQT YHLESVLHLV R
|
|---|
| |