Gene Acel_1341 details

Gene Information

• Locus tag: Acel_1341
• Symbol: secD
• ID: 4484766
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidothermus cellulolyticus 11B
• Kingdom: Bacteria
• Replicon accession: NC_008578
• Strand: -
• Start bp: 1494390
• End bp: 1496207
• Gene Length: 1818 bp
• Protein Length: 605 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 639730121
• Product: preprotein translocase subunit SecD
• Protein accession: YP_873099
• Protein GI: 117928548
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.022847
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 29
• Fosmid unclonability p-value: 0.845506
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGCCGCCGG TGAGGAGATC AAGGCCCAGT CGAGGCCTGT TGACGACCGG GGTGGTGCTA 
GCCGCGTTGT ACGGCGGGAT GGCCGCGACC GGGCATTACG GTCCGCAACT CGGGTTGGAC 
CTCCGCGGCG GAACGACGGT CACCCTGGCG GCGAAACCGA ACCCGGGCCA GAAGGTCACC 
TCGTCTGAGC TGAACACCGC GGTCAACATC CTGCGCAACC GGGTGAACGG TCTGGGTGTC 
GCCAACGCCG ACGTGCACAC CGAGGGGACC AACATTGTGA TCTCGGTGCC TGGCAAGGAC 
AAGCAGGGCG TCCTTGACAA GATTGGCGAG ACCGCGCTGC TCAGCATCCG GCAGGTCTAC 
GCGTCCAACG ACCCGGTGAT GACCGGCGTC ACAGCGCCCG GTCTGAGCGC AACGCCGAGC 
GCGTCACCGC CGCCTGCGGC GAGCTCGTCA TCTTCTGCGA GCCCGTCACC GAGCCCAAGC 
CCGTCGCCCA GCGGTGCCGC TTCCCCAGCG ACCCCGAAGC CGTCCGCGAG CTCCGCAGGG 
CTCGGCGTTG GCCGGACGCC GGGCATTCAG CTGGCCGGCT TCGTCCGCCA GGCGGCGTCC 
GCGGCGAGCA GCGCCGCGAC CGCCAGCCCA TCGCCGGCGC CGACCGCATC CCCAGCCGCT 
CCGTCCCCGA GCCCCTCGCC GGCGGCGAAT CCCGGGTACT ACGCGGTGCC GAACGCCGAA 
ACCGCCCCGA CCCCGCAAGA GATCGCCGCC TACCAGGCGC TGGACTGCAC GAAGCCGGAG 
AACCAGAAGG GCGGGATCAC CGACGATCCG GCGAAATTCC TTGTCACCTG CGGGAATGTC 
GACGGCGGCT GGTACAAGTT CCTGCTTTAC CCAACGCTGA TTGAAGGCAA GGAAATCGCC 
AGCGCCTCCG CTCAGCTCGA CCCGCAGACC GGAACCCAAT GGACCGTCCA GCTGACGATG 
AAGAGCGGTG CCGCCTCGCG GTGGGCAAAA TTTACCGCGG CGAACGTCAA CAAGGACACC 
GCCATCGTGC TCGACGGTCT GGTGATGTCG GCGGAGTACA TCGCAGAAGC GATTCCCAAC 
GGCAAGACGC AGATCAGCGG CAATTTCACC CATAAGACCG CGAGCGAATT GGCCAACGTC 
CTCAAGTACG GCGCGCTGCC GCTTCGGTTC GAGCAGCAGA GCGCGGAAAC GGTGTCCGCG 
ACCCTCGGGA ACAGCGAATT GCGCGCGGGG CTGCTCGCCG GCATGCTCGG ACTGCTGCTC 
GTCATTCTTT ATTCGATCTT TTACTACCGA GGTTTGTCGC TCGTCACCGT CAGCAGCTTG 
GCTCTCTCTG CGGCGATCCA GTACCCGCTG CTCGTCCTCC TCGGTCAGGG CATCGGCTAC 
ACCCTGACGC TCGCCGGTAT CGCCGGTCTC ATCGTCGCGG TCGGGGTGAC CGCCGACTCG 
TTCGTTGTGT TCTTTGAACG GTTGCGCGAC GAGGTTCGGG AGGGTAATTC GCTGCGCAGC 
GCCGTCGAGA AGGGATGGTT GCAGGCCCGG CGGACCATCG TCTCGGCCGA CCTCGTCTCC 
TTGATCGCGG CCATCATCTT GTACTGGCTG GCGGTAGGCG ACGTCCGCGG ATTTGCCTTC 
ACCCTCGGCC TTTCCACCAT CGTCGACCTC TTCATCGTCT TCGCCTTCAC CAAGCCGCTC 
GTCACGTTGC TCAGCCGGAC CGATTTCTTC GGCAACGGCC ACCGGTTCTC TGGTCTTGAC 
CCGGCGCACC TCGGCATCAC CCGGCTGCCC GGGACGGCGG GTGGGGCGCA ACGTCCGGTA 
CCGGCGCGGA GAGTGTGA 

 

Protein sequence

MPPVRRSRPS RGLLTTGVVL AALYGGMAAT GHYGPQLGLD LRGGTTVTLA AKPNPGQKVT 
SSELNTAVNI LRNRVNGLGV ANADVHTEGT NIVISVPGKD KQGVLDKIGE TALLSIRQVY 
ASNDPVMTGV TAPGLSATPS ASPPPAASSS SSASPSPSPS PSPSGAASPA TPKPSASSAG 
LGVGRTPGIQ LAGFVRQAAS AASSAATASP SPAPTASPAA PSPSPSPAAN PGYYAVPNAE 
TAPTPQEIAA YQALDCTKPE NQKGGITDDP AKFLVTCGNV DGGWYKFLLY PTLIEGKEIA 
SASAQLDPQT GTQWTVQLTM KSGAASRWAK FTAANVNKDT AIVLDGLVMS AEYIAEAIPN 
GKTQISGNFT HKTASELANV LKYGALPLRF EQQSAETVSA TLGNSELRAG LLAGMLGLLL 
VILYSIFYYR GLSLVTVSSL ALSAAIQYPL LVLLGQGIGY TLTLAGIAGL IVAVGVTADS 
FVVFFERLRD EVREGNSLRS AVEKGWLQAR RTIVSADLVS LIAAIILYWL AVGDVRGFAF 
TLGLSTIVDL FIVFAFTKPL VTLLSRTDFF GNGHRFSGLD PAHLGITRLP GTAGGAQRPV 
PARRV