| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aboo_1342 |
|---|
| Symbol | |
|---|
| ID | 8828304 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aciduliprofundum boonei T469 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013926 |
|---|
| Strand | - |
|---|
| Start bp | 1286886 |
|---|
| End bp | 1288757 |
|---|
| Gene Length | 1872 bp |
|---|
| Protein Length | 623 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | |
|---|
| Product | extracellular solute-binding protein family 5 |
|---|
| Protein accession | YP_003483712 |
|---|
| Protein GI | 289597016 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.274736 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTGATG AAGAAAAAGA AGAAATTGAA GAGGTTTTTG AAGAACCTAA AAGTACTAGT
AAACCACCGA AATCAAAATC TCTTGGGAAG ATTATAGCAG CCATTGTTGC AGTGATCATT
GTCATAGCAG CGATTGCAGG TGTATGGATG ATGTCTCAGC ATGGCGAAGA GAATAAAAAA
CCGGTAGTGG CGCCTAAGGT TTTGTATGTA GCGGGTACTT CGGATGTTAC GACCTGGGAT
CCATCGTATT CATACTCTAC AGAAGCTGAG TATTTAGCAA ATATTTACGA GCCTTTAATA
TGGGCAAATC CCCCGGGAAG CGGTAAACCT TTTGGGCCTG CACTAGCCAC ATCTTGGGAA
GTTTCAAGTA ATGGCTTAAC ATGGACTTTC CATCTGAGAC ATAATGTGAC TTTTCATAAT
GGAGATACTC TTGACGCTCA GGATGTTATA TTCTCAATAC AGCGAACTTT AACTACATTC
TACACTACTT ATGAAGGTGC AGGCTTTCTA TGGTGGCCAG TGGTGGATAA CTGGAAGACT
TTGCATGTAA ATATAACCGC TCCGGATGAT TACACTGTAG TATTCCACCT TACCTATGCT
ATTCCACTAG ACCGTGTGGC CGCCGCTATC TACGGAGCAT GGATATTCAG CTCTAAATTG
CCGGAAGGTG TGAATGAAAG CTCTTTGCAT GGGTGGTTTG AGCAAGGTCA TGATTTGGGC
TCTGGTCCTT ATACTCTAAG CGATTACCAA ACTGGCAAGA AGATTGTACT AAAGGGTTAC
GATAAATACT GGGGAGGATG GAACGATACC CAGTATAAAG AGGTAGATAT TGATTTAACA
ACTCCACAGC CAAGCACACA AACTCAGAAA TTACAGGCTG GAGAGATAGA TATTGCTAAA
GCTACTGATT TGAGTGCTAT TGATAATCTT AAAAAGGATC CAAAAATATC AGTTTATATC
TCACCAAGTG CATATAACTA CATAGGTTAC ATAAACATTT GGGCATACCA TCCAGAACTA
GCAAAACAGG GTTTAGATCC ATATCCATTC ACTCACAAAG AAGTTAGACA AGCAATTTCA
TATGGAATAA ATTACCAAGA AGTTTTAAGA GCTGGAGTCC TTGGATATGG TAGACAGGCA
AAGGGTCCTG TTCCTTATGG ATTATGGCCG CATACAGCCG ATGTGGATAG TCTATTGAAG
CAGTACAATT ATGACATTCA AAAAGCAAAA GATCTACTTG CCGCTGCAGG TTATCCCTCT
TCAACTACTG ATGGAAAACC AATGGCTGAA GATGGTAGCA ATGCATGGAT GATACTTCGA
TTGAACTATA CCGCCGAAAA TGCAGTAGAG GCTGCATATG CACCTGTAAT CCAGAAATCT
CTTGCAGACC TTGGCATATT TGTGAAGATA AATGCATTGG AGTGGAAGAC ACAGTGGTCT
CTAGCAAGGC AGGTACCTGC TGATAAACCG GCTGACTGGC TCACTAATGA GACATTCCTG
AAGAAGGTCT TTGGACCAAA GCAGGACATA TTCATGATTC TTTGGTGGCC CAGTATGGCT
GATGGATATG ATAACCTAAA TTCCATGTTT GCCGACCATA GCTATCCACC ACTCTTCAAT
CTCTGTTACT GGTACAACAG CACCTATGAT AGCTTACTCT GGCAAGCTTA CATAAAGACA
TCCACAGATC CATCTACTGC GAAAAGTTTG TATGTCAAGG CAATGAACCT TCTCATTGAC
CAAGCACCTG CACTGTTTCT CATAGATGTA CAAAGCGTTC TTTCTATGAA ATCAAACATA
GGCGGCTATA CTCCTAACCT GTACTATCCA AGAACAATAT TCTTCTACCA GCTGTACTAT
ATTGGTGAAT AA
|
|---|
| Protein sequence | MGDEEKEEIE EVFEEPKSTS KPPKSKSLGK IIAAIVAVII VIAAIAGVWM MSQHGEENKK
PVVAPKVLYV AGTSDVTTWD PSYSYSTEAE YLANIYEPLI WANPPGSGKP FGPALATSWE
VSSNGLTWTF HLRHNVTFHN GDTLDAQDVI FSIQRTLTTF YTTYEGAGFL WWPVVDNWKT
LHVNITAPDD YTVVFHLTYA IPLDRVAAAI YGAWIFSSKL PEGVNESSLH GWFEQGHDLG
SGPYTLSDYQ TGKKIVLKGY DKYWGGWNDT QYKEVDIDLT TPQPSTQTQK LQAGEIDIAK
ATDLSAIDNL KKDPKISVYI SPSAYNYIGY INIWAYHPEL AKQGLDPYPF THKEVRQAIS
YGINYQEVLR AGVLGYGRQA KGPVPYGLWP HTADVDSLLK QYNYDIQKAK DLLAAAGYPS
STTDGKPMAE DGSNAWMILR LNYTAENAVE AAYAPVIQKS LADLGIFVKI NALEWKTQWS
LARQVPADKP ADWLTNETFL KKVFGPKQDI FMILWWPSMA DGYDNLNSMF ADHSYPPLFN
LCYWYNSTYD SLLWQAYIKT STDPSTAKSL YVKAMNLLID QAPALFLIDV QSVLSMKSNI
GGYTPNLYYP RTIFFYQLYY IGE
|
|---|
| |