| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aboo_0534 |
|---|
| Symbol | |
|---|
| ID | 8827479 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aciduliprofundum boonei T469 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013926 |
|---|
| Strand | + |
|---|
| Start bp | 518322 |
|---|
| End bp | 519116 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_003482907 |
|---|
| Protein GI | 289596211 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.120125 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGAGT ATCCATTTTT GCTGAGGAAG AGTTTTATTG CGCCAAATAA AATTTTTGAT
CTTGAGGATG CGATTGAAAG GGGAATAATA ACCGATGAGA ATCTTGCTAC TCTCAACGAT
ATGGCAAGAA GAGGACTGAA GGGAGAGAAT GTGGATTTTG AAATTTTAAC CAGGGCGGCA
TTGCTCTTTC ATCGTAGATA TTCCTTTTAC TTAGAGAATT TTGAAATTAG TCCAGATTAT
TATCTCTCTC TTGCAGAATT ATTCGCTGAA AGGGTTGAGG GAGAAGCTGG CATGTTTTTA
AGGTACAAAA TTTTGAAAGA AAAAGGCAAT TTTAAAGGGG CTTTAAAATT AATTGATTCT
CTCTCAAGAA ATGGTAATAA AGAGTATATG CTTGAAAAGG CGGCTCTTTT GCTTGAAATG
GGGGAGAAGG ATGCAGCCCA GAAATTGTAT ATGGATATTT TGGATGATGT AAGTTCTTGG
GAGCATTTTG CAGACACACT TTACGATTTG GCAGAGTATG AGAGTGCAGC TGAGGCGTAT
ATGTATGTGA CAGAATTGAA TCCTACAGAG AGAGCGTATT ACAAAATAGC AAGTTCTCTA
GTAAAGCTTG GAAAGCACAA GGACGCAATT GAGTATTTGC AAAAGGCAAT AAGCATAAAC
AGATACCATC TCGACTCTTA CATTCTTCTT TACCGCATAT ATGGTGAGCT GGATATGCCA
GAGGAGAGAA AGAAAATAGC AACGAGGATG AAAAGAGCAG GATTTGATGC AGAGCTCTTG
GGGGTGGAGC AATGA
|
|---|
| Protein sequence | MEEYPFLLRK SFIAPNKIFD LEDAIERGII TDENLATLND MARRGLKGEN VDFEILTRAA
LLFHRRYSFY LENFEISPDY YLSLAELFAE RVEGEAGMFL RYKILKEKGN FKGALKLIDS
LSRNGNKEYM LEKAALLLEM GEKDAAQKLY MDILDDVSSW EHFADTLYDL AEYESAAEAY
MYVTELNPTE RAYYKIASSL VKLGKHKDAI EYLQKAISIN RYHLDSYILL YRIYGELDMP
EERKKIATRM KRAGFDAELL GVEQ
|
|---|
| |