| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_4155 |
|---|
| Symbol | |
|---|
| ID | 4669556 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 4609493 |
|---|
| End bp | 4610167 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639825342 |
|---|
| Product | general secretion pathway protein J |
|---|
| Protein accession | YP_972470 |
|---|
| Protein GI | 120612792 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4795] Type II secretory pathway, component PulJ |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.220352 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.000742504 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCGGG TCCGCCGAAG CCGCGAGCGG GAAACGGGGT TCACCCTCGT GGAACTGCTC
GTCGTGATCT CCCTGCTGTC GCTGGTCATG CTGGCCATGG CCTCCGCCCT GCGCACCACC
GCGCAGACGG AAGAGCGCGT GGATGCCCGC CTGCGCAAGG TGGACGACCT GCGGACCACC
GACGGTTTCC TGCGTTCGGT GCTCGGACGG ATATCCCTGC GCAAACGGCC GGGGATCACC
AATGTCAATG AAAACGCATA CTATTTCTTC GGGGGGCCGC AGGAAATGGC GTGGGTGGGC
ATCATGCCCG CCCGGTATGG CGTGGGGGGG CGCTTCTTCC TGCGATTGGG CCTGGAGGAC
GGACCTGCCG GCCAGTCGCT CGTACTCCGA TACCTTCCCT TCGTGGATTC GCCCGCCTTG
CCGGACTGGG GACGGGCCGA GACCTACGTG CTGGTGCCCG CCGTGAGCGG ATTCGAACTC
CGCTATGAGG ACGCGTCGCC GGAGCCTCCG CAATGGGGTG CCCCCTGGAC GATCACCGAC
CGCCTTCCCC AGCGGGTATC GGTACAGATC CGCACCGCCA CCGATGCCTG GCCGGAAATC
GTGGTGCCCA TGCGGGCGCT GCCGAACAGC GATCCTTCCA TCGGTGGCGC CACGTTCGGA
GGCAGCAGCC GATGA
|
|---|
| Protein sequence | MGRVRRSRER ETGFTLVELL VVISLLSLVM LAMASALRTT AQTEERVDAR LRKVDDLRTT
DGFLRSVLGR ISLRKRPGIT NVNENAYYFF GGPQEMAWVG IMPARYGVGG RFFLRLGLED
GPAGQSLVLR YLPFVDSPAL PDWGRAETYV LVPAVSGFEL RYEDASPEPP QWGAPWTITD
RLPQRVSVQI RTATDAWPEI VVPMRALPNS DPSIGGATFG GSSR
|
|---|
| |