| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_4008 |
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| Symbol | |
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| ID | 4669434 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax citrulli AAC00-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008752 |
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| Strand | - |
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| Start bp | 4448632 |
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| End bp | 4454007 |
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| Gene Length | 5376 bp |
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| Protein Length | 1791 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639825195 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_972323 |
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| Protein GI | 120612645 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGGCA AACCCGCGGC CCGGCAGGGC GACTTGACAA AAAAAGGCGG CCCGATCGTC
CAGGGCTCGG CGACGGTGCT GATCGGCTCG GCGGGAGGCG TGGCGTGCTC GGTGTGCCCC
GGGGGCATGG CGGTGGGCAA CCCGGTGAAC CCGGCGCTGG GCGCGAAGGT GCTCACGGGG
GGCGATGAAC TGGACTTCGC GCTGCCCGGG CCATTGCCGC TGGCGTGGCA GCGGGTGTAC
AGCAGCTATG TGAACGCGGA GCATGGCGCG GCGTGCGGGC TGCTGGGGTA TGGGTGGAAG
CTGCCGCTGG AACTCCGGTT GCGGCTGCAA TCGGATCGGG TGGTGCTCTT CGATGCATCC
GGGCGGGCGA TCACCTTTGA AGAGGCGCTG CTGCCGGGGC AGGCGCTCTA TAGCAGCAGC
GAAGACTTGT GGCTGTTGCG GGGCGGCGGC ATGACGGATG TTCATTCCCA CGCCATCGCA
TCTTCCAAGG ACACGAACTC GTCATCTACC CGGACCTCTA CCCCGGCCGA ACTGCTGCCC
TGGGCGCAGC AACCGCGCTG GTCGCACGTG CCGGCGGTGC TGCGTGCGGA CCCGGGCTGC
GTGATCGCCG TGCCGGGCGC GGGCGGTGCT GGTGCGCCGG TCTGGGTGTT CCTGACGGCG
GGCGTATCGG GCGACGGAAC AGCTTCGGGC CATGTCCTGC ATGCCGTGAT CGACCGCTTC
GGCCGCAGCC AGCGCTACCA GTGGGGCACG GAAGGCGAAC AGCAGGGCCG CGTCGCAGGC
ATCACCGATG GCAGCGGGCG ACGCTATGCG CTGCGCTACG AGCGCATCGC GCAGGATGCC
GGGACAGCAC AGACAAGTGC CCATCCCCTG CTGCAACCCG ACGACGGTGT AAGGCTGGTG
GGCGTGGACT GCACCTTCAG CCCGCTCGAC CCTGCAGTGA TACCCGGCGC GGCCCCGCGC
CCTCAGCCGC TCGTGGGCTA CCGCTACGAC AGCGCAGGCA ACCTGGCCGA GGTGCTGGGC
GCGGACGGCA CCGTGCTGCG CCGCTTCGGC TACGACGCAT TGCACCGGAT GACGGAGCAC
CAGGTGCGCC AGGGGCCGCA GCACCGCTAC GTCTATGAAG ACCAGACCGC GCAGGGCCGC
CGCCAGGGAT GGGCTGCCCG CCCGGGTGCA CGCGTCGCCG AGCAGCACAA CGAAGAGGGG
CTGTCATACT TCTTCGAGTA CAGCCAGGCA TCCGCGCAAC CTGCGCCATC CACGCACACC
ACGCAGGCGA CCCAGGGCCC GGAGGATGAC CAGGATGGCC CGACTCCGGC CACCGCGTCT
TTGCCCAGCA ATCGCCAAAG CAGCACGTTG GTGCACGACA GCCTGGGCCG TACCACGGCC
TACCACTTCG AAGGCGAAGG CGGCCTCAAG CGCCTGGTGC GTCTCGTGGC CCCGGATGGG
ACCGAACAGA GCTACCGCCA CGACAGCGCC GGCCGTCGCC TCTCGGCCAC CGATGCGCTG
GGCCGCACGA CGTGGTGGCG CTACGACGGC GCGGGCCGGC TGCTGGGTGT GCAGGGCCCG
GACGGGCGCA GCACGCAACA GCACTGGGGC GCGGCGGGCA GCGCGCAGGA CGGCTTGCTG
TTGGCCAGCC AGGACGCGGC GGGGCTGCGC ACGCACTTCC GCTACGACGA CTGGGGCCGG
CTGGTGGAGG TGGCGATGGC ACCAGCCGGG AGCGGGGACG GAGCCACGAA CACCCAGGTC
CTCACCACCC GCTTCGAATA CGAACAACCC CGGCAGGATG CCGCCACCAG CACAACTGCC
GGCAACATCG CCTTCCCACC GCACACGCTC GCCTGGTGGG ACCAGCCCGT GGCGATGATC
GACGCGCAGG GCGGGCGTAG CCTCTACGCC TACAACGCCT GCGGCCAGCT CGCGCGGCAC
ATCGACTGCT CCGGCCGCAG CCAGTCCTGG CGCCACGGCG CCTGGGGCGA GGTGCTGGAG
GCGACGGACG CGCTGGGCCA GCGCACCCAG CTGCACCACG TGCTGGAGCA TGGCGCGCTG
CGGCTGGTGG GCGTGCAGCA GCCGGGCAAC ACGGCGGTGC GCCACCGCTG GTCGGCCGCC
GGCACGCTGG AGGCGACCAC CTACGGCGCG CACGACGTGC TGGAAGGCAC GGGCGAGCCC
GCGGGCACCA GCACGACAGT CACCTACCGC CACGACCTCT GGGGCCGGGT GGTGGAGCAG
GTGCAGGCGG GCCGGGGCGT GCAGCTGCGC TACGACGTGG CCGGGCGGCT GCAGGAACTC
GTCAACGAGA ACGGCGATGT CACACGCTTC GTGCACGACG CGGCCGACCG GCTGGTGCAG
GAAGTGGGCT TCGATGGGCG CAGCCAGGTG TATGGCTACG ACGCGGCCGG CCAGCTCACG
CACACGGGCG ACGGGCATGG CGAAGGCCAC CACCCGGGAG CGGCGGCGCG GCCGGAACTC
GGGGCGGTGG TGCGCACGCG GCTGCACTAC GACCTGGGCG GCCGGCTGGT GGCGCGTGTG
GCCGTACGGC TGCCGGCAGC GGCATTGGCC GGTGTTGGCG TCAGCGTCGC AGGTGATGCG
CCCGACAACC CCACGGCTGA ACCGCATGCC GTGCTGCAGA TCCAGCGCTT CGGGCACACC
GCGGCCGGAG CCCTGCTGCA GGCGCGGACC TGGGAGACAG AACTGCCCCA CGGGATCGAG
CCCATGGCCC TGCCAACGGC CCTGTCTCCC GACTCCTCGC GCCCAGGCGC TGCCACGGAC
CGACCCATCC CCCTCGCCGA GCGCTGGCTG GCACTGGACA CGCAGGCACT GTTGTCCCTG
CTGGACCGCC CCAGCGATCC GACCCAGGCC CCGCTGGCAG CCGCGCTGCA GGCGCAGCGG
CTGCAGCCCG AGGCCCGCGT GGCCCTGGCG CGCGATGCCT TCGGGCGTGT CTGTGGAGAG
ACCCAGACGC TGTACCGGCA GGCCACCCAG CCGCAAGCGC CCCATGCCGG CGGCGAGCCG
CCCGTGGAGT TCGAGCACGC GATCACCCAC ACGCTGGGCC CGCTGGGCCA GCGCACGGCC
ACTCAGGCGC AGGGCCTGGG CACGCTGCAG TGGCTGGCCT ACGGCTCGGG CCATGTGCAC
GGGCTGCTGC TGGACGGCCA GCCGCTGGTG GACTGGGAGC GCGATGCGCT GCACCGCGAG
GTGGGGCGTA CGCTGCACGT GCTCGAAGGC AAAGACAACG AAGACCTGCA CGCCATCGTG
CATGCGCGGC AGCTCGACCC GATGGGCCGC ATGCTGCACC AGGACTGGCG CGGCCTGCGC
CATGCGACGC CGGTGGTTCC TGCCGACCCG GCCAACGCCT TCGGAACGGG TCCTTCGTCC
GCCGCGGGCC GCATCGCCCC GGCCCTGGGC CCGCTGTCCA CGCTCGCGCA GCGCCGCTAC
TGGTACGACC CGCTGGGCCA ACTGGTCGGC GTGCAGACCC CGGGCGAAGC CACGCGCTAC
GGCTACGACG CCTGGCAGCG CCTGAGCGGG CTGCACCGCG CGGGCCAGGG TACGCCGGAA
GTGCAAGCGC ACTGGGCGCT GGACGCGGCG GGCAACCGCC TGCCCGCGTC CCTGGATGCG
CGCGCGGCCG GGTCTTCTGC GAGCGAGCGC CAGGGCTGGG CACGGCAGGT GCGCGAGAAC
CTGCACGATG CGGACTTCGA CCTGCTGCGC GCGGGCGACG GGCCCGGCGA AGGTGCAGGC
CCGGTCACGC GCTGGCCGGG CAACCGCATC GGGTGGAGCA CCCCCGAACC GGATGCCGAT
GGCACCAGCA TCGCTGGCAG CGACGGCAAC GGCAACGGCA ACGGCAACGG CAACGGCAAC
GGCAACGGCA ACGGCAACGG CAACGGCATC CTGATCCGCT ACCGCTACGA CGCCTTCGGC
AACCGGGTGC AGGCGCTGCA CGCCGACGGC CGGGCGCAGC GGCTGCGCTA CGACGCGCTG
CACCAATTGC GCGAGGTCTG GCAGCGCGAG GCAGCGGGTG GCGCCTGGCA GCGGGTGGCC
TGCTACCGCT ACGACCCCTT CGGGCGGCGG CTGGCCAAGA CCGTCTTCGG CAACGGTAAC
GACAACGGCG GCAGCAGCGA GCGGGTAGCT GCATCGGGCG TCGCGACCGC CACCTACGCC
GGCTGGGACG GTGACCGCCT CGTGCACAAC GAAGGCCCCC AGGGGCTGCA GCACGTGCTC
TACGAACCCG GCTCCTTTGC GCCGCTGCTG CGCCTGGAGC GTGAGCAGGC CATTCCCACG
GCCTTGCAGG CCATGCTTTC CATGGAGGAA GACCAAGCTC GCATGGGGCT AAATAGCCAG
GAAAGCGGCC TATCACCTGC CGCAGCCCTG TTCGCTGGCT TGCCCCGTGC GCAACGCGAA
CTGCTGGAGG GCGCCCTACA CGACGCTATC GGGCCCCACG GCAACGCTCT ACAGGCGCGA
CTGCAGGCAA GTCTGCCCGA AGAGGCCGGC GCATTGTTGA TTGCGGGCCT GCAATCCGTG
CGCCAGCAAC AGCAGGCTGC CACTCAGGCC CATCCCACGC GCATCCGCCA TTTCCTTTGC
GACCACCTGG GCACGCCGAT CGCCCTGGTG GATGCCAACG GCCCGCAGGC GGGCTTGGTG
ACCTGGGCTG CGACCTACCA TGCCTGGGGT GCTGTGCGCG AGGAATACGA CCCGCACGGC
ATCAATCAGC CCATCCGCTT CCAGGGCCAG CAGCTTGATG CCGAGACGGG GCTGCACTAC
AACCGGTTCC GTTATTACGA CCCGATCCTG GGTCAGTATG TGACGCAGGA TCCAATCGGA
CTGGTGGGCG GGAGTCACTC TTACGCCTAC GTTGGAAATG ATCCGTTGAA CTGGGTTGAT
CCGCGTGGCT TGGAACCGGG CTCGATGGCT CAAAGAGGGT ACCTGGACAA CAACCGTCCG
AGCTACCCAG GACTATTAGG GCAGGACGAA AATGGCGTGC TGTTGTTTGA TGAAAAGAGC
CCAAATTTTC ATAGCTACAA CGTTAGTAAT TCATGTCAAA AAAATACCCC TGGCTGCACG
TTTGGTAATG TTGCTGAGGG GCTTATGAGA TACCCCGCTC CAGGCGCGAG TGGAGAGCCT
ATTGCAAATA AACAAAGTGG TTTTGCTTTT CCCGTGGGGC CTGTAACTCA CGTGGTGTCA
CCCGATAGGT CAATGGTCAC TAATATCACC GAGAAAAGCC ACCTACTATA TCCCGGTATT
GTACGACGCT GGGTTTCGGA AAGTGCCAAT GAAGTTACTG TACACACATA TGGCGAGGGC
GTGGGGCCGA TGGGTAAGAT GAATAATGCG CTTGCGGACT GGCTCTGGGG TAAAGTGGAT
AAAGATGTTT TTAAATATGC GGAATCATGC AAGTAA
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| Protein sequence | MSGKPAARQG DLTKKGGPIV QGSATVLIGS AGGVACSVCP GGMAVGNPVN PALGAKVLTG
GDELDFALPG PLPLAWQRVY SSYVNAEHGA ACGLLGYGWK LPLELRLRLQ SDRVVLFDAS
GRAITFEEAL LPGQALYSSS EDLWLLRGGG MTDVHSHAIA SSKDTNSSST RTSTPAELLP
WAQQPRWSHV PAVLRADPGC VIAVPGAGGA GAPVWVFLTA GVSGDGTASG HVLHAVIDRF
GRSQRYQWGT EGEQQGRVAG ITDGSGRRYA LRYERIAQDA GTAQTSAHPL LQPDDGVRLV
GVDCTFSPLD PAVIPGAAPR PQPLVGYRYD SAGNLAEVLG ADGTVLRRFG YDALHRMTEH
QVRQGPQHRY VYEDQTAQGR RQGWAARPGA RVAEQHNEEG LSYFFEYSQA SAQPAPSTHT
TQATQGPEDD QDGPTPATAS LPSNRQSSTL VHDSLGRTTA YHFEGEGGLK RLVRLVAPDG
TEQSYRHDSA GRRLSATDAL GRTTWWRYDG AGRLLGVQGP DGRSTQQHWG AAGSAQDGLL
LASQDAAGLR THFRYDDWGR LVEVAMAPAG SGDGATNTQV LTTRFEYEQP RQDAATSTTA
GNIAFPPHTL AWWDQPVAMI DAQGGRSLYA YNACGQLARH IDCSGRSQSW RHGAWGEVLE
ATDALGQRTQ LHHVLEHGAL RLVGVQQPGN TAVRHRWSAA GTLEATTYGA HDVLEGTGEP
AGTSTTVTYR HDLWGRVVEQ VQAGRGVQLR YDVAGRLQEL VNENGDVTRF VHDAADRLVQ
EVGFDGRSQV YGYDAAGQLT HTGDGHGEGH HPGAAARPEL GAVVRTRLHY DLGGRLVARV
AVRLPAAALA GVGVSVAGDA PDNPTAEPHA VLQIQRFGHT AAGALLQART WETELPHGIE
PMALPTALSP DSSRPGAATD RPIPLAERWL ALDTQALLSL LDRPSDPTQA PLAAALQAQR
LQPEARVALA RDAFGRVCGE TQTLYRQATQ PQAPHAGGEP PVEFEHAITH TLGPLGQRTA
TQAQGLGTLQ WLAYGSGHVH GLLLDGQPLV DWERDALHRE VGRTLHVLEG KDNEDLHAIV
HARQLDPMGR MLHQDWRGLR HATPVVPADP ANAFGTGPSS AAGRIAPALG PLSTLAQRRY
WYDPLGQLVG VQTPGEATRY GYDAWQRLSG LHRAGQGTPE VQAHWALDAA GNRLPASLDA
RAAGSSASER QGWARQVREN LHDADFDLLR AGDGPGEGAG PVTRWPGNRI GWSTPEPDAD
GTSIAGSDGN GNGNGNGNGN GNGNGNGNGI LIRYRYDAFG NRVQALHADG RAQRLRYDAL
HQLREVWQRE AAGGAWQRVA CYRYDPFGRR LAKTVFGNGN DNGGSSERVA ASGVATATYA
GWDGDRLVHN EGPQGLQHVL YEPGSFAPLL RLEREQAIPT ALQAMLSMEE DQARMGLNSQ
ESGLSPAAAL FAGLPRAQRE LLEGALHDAI GPHGNALQAR LQASLPEEAG ALLIAGLQSV
RQQQQAATQA HPTRIRHFLC DHLGTPIALV DANGPQAGLV TWAATYHAWG AVREEYDPHG
INQPIRFQGQ QLDAETGLHY NRFRYYDPIL GQYVTQDPIG LVGGSHSYAY VGNDPLNWVD
PRGLEPGSMA QRGYLDNNRP SYPGLLGQDE NGVLLFDEKS PNFHSYNVSN SCQKNTPGCT
FGNVAEGLMR YPAPGASGEP IANKQSGFAF PVGPVTHVVS PDRSMVTNIT EKSHLLYPGI
VRRWVSESAN EVTVHTYGEG VGPMGKMNNA LADWLWGKVD KDVFKYAESC K
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