| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_3923 |
|---|
| Symbol | |
|---|
| ID | 4665920 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 4345722 |
|---|
| End bp | 4347296 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 639825111 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor |
|---|
| Protein accession | YP_972240 |
|---|
| Protein GI | 120612562 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.11075 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0878902 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGCCC TGGTACCTGC CGGCGGGGCG GATGCAGCCC TGCGCGAGGA CGAATACCTC
ATCACGCGGA CCGACATCGA GGGCCGCATG GTGTACGTGA ACGCGGCCTT CGCCGAGCGC
AGCGGCTACG AATCCGGGGA GCTGCTCGGG CAGCCCGCCA GCATGATGTA CGCGCCCGAC
ACGCCGCCCG AGTTGAGCGC CGACCTGTGG CGCACCGTCA AGGCCCACGG TGCCTGGACC
GGCGTGATGC GCCACCGCTG CAAGGACGGC AGCTGCTTCT GGGCGCAGGC CACGATCACG
CGCACGATGC AGGACGGCCG GCACGTGGGC CATACCACCG TGCGCACCCG GGCCGGCGAG
CAGGAAGTGG CGCGGATGCG CCGCTTCAAC GCCGCCCGGC AGCGCGGGGC GGTCGCGCTC
CACACGCTGC GCGAAGGGCG GCTCGCCCTG CGCGGCATCG GCGGACTGCT GCGCCTCGTG
GCGGCGCCCA CCCTCGCGTC GCGATTGGCG CTCGCCCAGG CGGCCAATGC CGTGGTGGTC
TGCCTGGCCG CGGCGCAGTG GCTCGGCGCC CGGGATGCCG TGCCCCCCGC CGCCATCGCG
ATCTGCGTGG TGTCGCTGGC CCTCGGCGCC GCCCTGGAGA TGGCCCGGCG GCGCATCCGA
CGACCCGTGG GCCGCCTGCT GGCACACGCG CGCGGCATCG GCGCGGGCGA CCTCACGTGG
CCGGCGGCGC CGGACACGGG CGCGGACGAC GAGGTGGCAC GCCTCGGCGC CAGCATGGAC
GTCATGCAGA AAAGCCTGGC CAGCCTGGTG CGCGACCTGC GCGAGGGCGT GAGGACGGTC
GATGGCGCGG CCAGCGAAAT CTCCGACGCC AACATGGACC TGGCGGCGCG CACGGAACAG
ACCGCTTCCG CCATCGAGCA GGCGGTGGGG CGCATGCACG ACCTGAGCGA CGCGGTGCAC
CGCAATGCCA CCCATGCGGA CCGGACGCAC CGGCTGGCCG CCTCGTCCCG CGACGCCGCC
GAACAGGGGC GCGAGCTGGT GCGGCAGGTG ATCGACGGCA TGGGCGACAT TGCACGCAGC
ACCGCGGGCA TTTCCGACAT CTCCTCGATG ATCGAGGGCA TCGCCTTCCA GACCAACATC
CTCGCGCTCA ACGCGGCCGT CGAGGCGGCG CGCGCGGGCA CCCACGGCCG CGGGTTCGCG
GTGGTGGCCG CCGAAGTGCG CAGCCTCGCC CAGCGCAGCT CGGAAGCGGT CCGGCAGATC
AGCCAGTTGC TGGACGTCTC CCGGGGCCAT GTCGCCAGCG GGGAGCGGCT GGCCCAGGCC
GCGGGCGGCA GCATCGACGA GATCGTGCGC CTCGCCTCCC AGGTGCTGGC CACCGTGGGC
GAGATGTCCC AGGCCTCCCA AAGCCAGCAC GAGGAGATCA CGCGCATCAA CGGCGTCATC
GGGCGGATCG ACGATGCCGT CCGGCAGAAC TCCGCCATGG TGGAACAGGC GGCTGCCGCC
GCGGCTTCCC TGGCGGACCA GAGCCGCAGG CTCGACCACT CCGTCTCGCT GTTCAGGACC
GGTGCCGCCC ATTAA
|
|---|
| Protein sequence | MSALVPAGGA DAALREDEYL ITRTDIEGRM VYVNAAFAER SGYESGELLG QPASMMYAPD
TPPELSADLW RTVKAHGAWT GVMRHRCKDG SCFWAQATIT RTMQDGRHVG HTTVRTRAGE
QEVARMRRFN AARQRGAVAL HTLREGRLAL RGIGGLLRLV AAPTLASRLA LAQAANAVVV
CLAAAQWLGA RDAVPPAAIA ICVVSLALGA ALEMARRRIR RPVGRLLAHA RGIGAGDLTW
PAAPDTGADD EVARLGASMD VMQKSLASLV RDLREGVRTV DGAASEISDA NMDLAARTEQ
TASAIEQAVG RMHDLSDAVH RNATHADRTH RLAASSRDAA EQGRELVRQV IDGMGDIARS
TAGISDISSM IEGIAFQTNI LALNAAVEAA RAGTHGRGFA VVAAEVRSLA QRSSEAVRQI
SQLLDVSRGH VASGERLAQA AGGSIDEIVR LASQVLATVG EMSQASQSQH EEITRINGVI
GRIDDAVRQN SAMVEQAAAA AASLADQSRR LDHSVSLFRT GAAH
|
|---|
| |