| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_3788 |
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| Symbol | |
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| ID | 4667469 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax citrulli AAC00-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008752 |
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| Strand | + |
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| Start bp | 4209225 |
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| End bp | 4213889 |
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| Gene Length | 4665 bp |
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| Protein Length | 1554 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639824979 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_972108 |
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| Protein GI | 120612430 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0253716 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGGGAAGA CTTACATAGA CGGCAAGGAG GTCGTGTCGC AGGCCGCCGC GGGGAAAGTG
TTCAAGCCGG ACGATTTCGT CTTCCTTCGC AAGAAGGACA TTCCGGGCGT GGCCCCCTAC
CGCAATGACA GCGGGTCCAT CGACAACCCC GCGGGCTCCA CCTTCCATTC GGGCACCGAC
GTGGCCACGG CCGAAAGCGC CCTGATGAAC GGCTGGCACG CGCCCCAGGT ATCCAAGGGC
GGGGTGATCA CCCTGGTGCG CGACGGGCCG GCCACGTTCA CGGGCAACTG GGGCAAGCAG
GTCTGGATCG AAGACCACAA GACAGTGCGG CACGAAACGG ACGTCGGCAC CACGTCGATC
TGGTCCAGCT TCGGCGCGGT GAAAACCGCG ATGTCCAACA CCTGGGACAT CGCCAAGGAG
CTGGACGGCG ACCTGGCGTC TGAAATCGCA GGGGAGTTCG GCGACGAGGT GCTGGCCAGC
CTCAAGGACC TGTTCACCTG GGAAACACTG GGCGGACTGG TGGTCGATGG CGGCATGGCG
CTCGCCACCG CGGCCCTCAC GGCAGCCGCC CCGGTGACTG CAGGGGGCTC CGGCGCGGGC
GCGCTCATGA CCGGGGCAGC CACCGGCGTG CGCGTGGGCC AGCGCGTGGA AGCCGGGGCG
CAGACCGCCG CCGCGCTCAA GGAAGAACTG GGCGGCCTCA TCGCCGATCT CACGCGCCCC
GACCTGTCCC GCGAAGAAAA GCGCGACATG GCCAAACGCG CCGCGGGCAT CCTCGCGCGC
AGCACCGTGG GCGTGGGCAT CTCCATCATC ACCAAGAAAT CCAGGCCGGC GAAGAAACGC
GAAAACGACA AGACCGACGT CAAGACGTCG AAGAAGGGAG AAAGCAATCC GACGAAGTGC
GCATGCGCGA CCGAAAACCC CGTGGTCCTC GCCACGGGCG AGAAAACCCT CACGCAGACG
GATTTCTCGT TCGGCGGGCC GATCCCCATG GGATGGCTGC GCCACTATCG CAGCGGAGAC
GCACGCACCG ATGGCTGGTT CGGCCAGGGC TGGAGCCATC CCCTCGCCAC CGAACTGTGG
CTGCAGGCGG ACCAGTTGCT CTACCACGAT GGCCAGGGCC GCGCCGTCCG CCTGCCCGGC
CTGGAGGAAG GCGAGGAGCA TTTCGAGGCC TACGAGCGCT TCACGGTCCG CCGCACCGCG
CCCGATGCGT GGCAACTCGT GCATACCGAC GGACGCATCC ACCATTTCGC GCGCCAGGCG
GCGGGCCAGT GGCGCCTTCC CCTGGTGGCC CTCAGCGACC GCAACGGCAA CCGCATCCAG
CTGCACTTCG ACCAGAGCGC CTTCGGCCCG GGCTTCCGCC CTTTCGCCAC GCCGCCGCGC
CCCGGGCGCA TCGCCGACAG CGCGGGCCGC TGGTTCCGCC TGGACTGGAG CCCGCGGGGC
CAGCTGGAGT CTGTCCACGC ACTGCACTCC GGCGGCGAGG AGACGCTGCT GGCGCACTAC
CACTACGCCC CTGACGCGCA GGATCCGCGC GGCGAACTGG CTCCGCCCAA CCTCGTGGCC
CACACCAACG CCGCCGGCCG CGTGCGGCGC TTCGAGTGGA ACAGGCACCT GCTCGTCGGC
TACACACTGG CGGACGGCGC GCGCCACCAC AACGAATACG ACACGCTGAG CCCGCAGGGC
CGCGTCACCG TGTCGCGCAA CCTCGACAGC GGCGCGGCGC ACCAGTTCAC CTATGAGCGG
CACCGTACCT GGATGCACGA TGCGCTGGGC CGCACCATGG GCTTCGCCTT CGACGAGCGC
CGCGACATCG TGGCCGTGCG CGACGCGCTG GGCCACGTGA GCCGCACGCC CTTCGACGCC
AACGGCCACC CCGAGGCGGC GGTGGATGCC CTGGGCCGCG AGACGCGCAC CGTGTTCGAC
CGCCGCGGCA ACCTGACGCT GCACCTGGAT GCCGCCGGGC ACGCGACCCG CATCGAATAT
GGCACCGAAG GCGGCGCCCG GGACCGCCCC GTGCGCGTCA CCGATGCCCT GGGCCACACG
TGGACCCATG AATACGATGC GCGCGGCAAC CGCATCCGCT CCACCGATCC ACTGGGCCGC
AGCACCGCCA CCCAGTACGA CGCCCGGGGC CTGCCGGTCG CCCTCACCGA TGCCGCCGGC
CGCATCCGCC GCCTGCAGTG GGACGCCTCC GCCCAGCTCA TCGCCTATAC CGACTGCTCG
GGCCGCACCA GCCGCTACGC CTACGACGCC CTGGGCCATC TGGCCGAGAG CGCCGATGCC
CTGGGCCACA CCACCCGCTA CCGCCACGAC GCGCAGGGCC GCCTGCGCGA AGTGATCGAA
CCCACGGGCG CCACCCACCG CTACGAATGG GACGGCGAAG GCCAGTTGCT CGCCTACACC
GACCCGCTCG GCGGCACCAC GCGCTACCGC TACCACGGCT CGGGCCAGCC GTCCGAGCGC
ACCGACGCGC GCGGCGGCGT GCTGCGCTAC CACTACGACC TGGGCGAACG GCTCGTCGCA
CTGACCAACG AGAACGGCGC GCACACCCGG TTCACCTACG ACGCGGCCGA CCACCTCACC
GACGAGATCG GCTTCGACGG CCGCCACCAG CGCTACGTGT ACAACGCCGC GGGCGAACTG
ACCCACGTCA TCGAGGCCGG AGGCAGCGAT GCCGGACCGG GCAAGGTCAC GCACCTGGAG
CGCGATGCGC TGGGCCGCCT GGTGGGCAAG CGCGCGCACG GCGACGCATC GGCCGAAGAC
AGCCGAGCCA CCTACACCTA CGACCCGCTG GGCCGCCTGA CGGCAGCGAC CAACCCGGCC
GCCGCGATCG CATGGCGCTA CGACCCGGTC GGGCAGATCC TGCAGGAGGT GCAGACGCTC
CAGCCCCTGC CTGGGCAGAA GGGACAGCCC GAGGAACGCG CCCTGTCGCA CGAGTACGAC
GAACTGGGCC ACCGCATCCG CACCACCCTG CCCGATGGCC GGGCGCTGGA CTGGCTGCAC
TATGGATCGG GCCACCTGCA CCAGATCGGG CTCACGGAAG CGGGTCCAGG CACACGCACC
GTCATCACCG ACATCGAGCG CGATGCCCTG CACCGCGAGA CCCAGCGCAG CCAGGGCGCG
CTGCACAGCC GCTACGACTA CGACCCGGCC GGGCGGCTGG TGCGCCACCG GGCGGCAGTG
GGTGCGTCGT CCACCTCCTC TTCCGCAACC ACGGTGCGGC TAGAACGCGC CTATGCCTAC
GATGCCCTGG GCCAGTTGGT CGCCCGGGCC GACACCCTGC GCGGAAGCCA GGAGTTCCGC
TACGACCCGG TGGGCCGCAT CCTCGCCGCC CTGCCCGGCC AGGGCAGCCA TGCACCGCGG
GAGCTGTTCG CCTTCGACCC CGCCGGCAAC CTGCTGGATG CCACCGAGGC GCAGATGCAG
CGCGCGCAGC AACCACAAGC ACACGGCTCT TCTTCGTCCG GCCTGGGTGT GGTCGGCGAC
AACCGCCTGC GCTTCTACCA GGACCTGCAC TTCGAATACG ACGTGCATGG CAACGTCGTG
CGCCGCACGC GCGGCAACCG CCGGGCGGGC CACCACGAAA CCACCGAGTT GCGCTGGAAT
GCCGACCACC AGCTGGTGGA AGCCGCCTCC CACCGCAACG GCGTCACCCA GGCCACGCAC
TATGCCTACG ATGCGCTCGG CCGGCGAGTG GCCAAGGCCG ATGCCTTCGG CACCACGCGC
TACCTGTGGG ACGGCGACCT CATGGTGCAC AGCCAGCGCG GGGGCAAAGC CAGCCTGTTC
ATCTACGAGC CGGGCAGCTT CGTGCCCCTG GCCACCGTGC AGGGCACGCA GCAGCCAGGC
GACAGCCGCA TCTACTGGTA CCAGTGCGAC CAGATCGGCG CTCCGCTGGA ACTGACCGAT
GCCCAGGGGT ACATTGCCTG GGCTGCGGAT TACAAGGTGT GGGGTGAGGC CACGCTGCGG
GCAGTTCCAA GAACGGCCAC AGGGACGGAC GGGGTATCCG GCGAACGACG TCGGGGGCAT
GGGCCGGTAA TGGACGTGCA TGAAGGCGGC GGCGAGAAAG CGCGTCCGAC TCCGCCAGCG
ATCATAGAAC AGCCCTTCCG GTTCCAGGGG CAACAGTTTG ATGAGGAAAC GGGGCTGCAT
TACAACCGGT TCCGGTACTA CGAGCCAAGT GTTGGGAGGT TTGTAAGCCA AGATCCGATC
GGACTACTCG GTGGAGTTAA CTCATTTACA TATGCGCCTA GTCCAAATAA TTGGATGGAT
CCTTTTGGGC TATCCTGCTG CCCTTGCCCG ACAGGGACCG CGACAATTCA TCATTATGAG
GGCACCGCCG ACAATCCTTT TGGACACTAC AGCATAGAAG TTACCGCAAA TGGTACCTCA
TTGCACACGC ACCAAGGGGT TTTTCAAGAT GGAAAACAGA CCGCAATTTT ATCAAATCGC
GGCAATTCCG GGACGACGCA AGCAACCGTT GCGATTCCCG ATGCAAAGGC TGCACAAGAC
TATCAAAGAA AAATGATGGG CCAATACACT GGCCCCTATG ATCGAAAAGA TAACAGCTGT
GTGACCCACG TAGCAGAGGT GCTTAAAGCT GGCGGAGTTG ACATGCCCCG CGAACCCAAG
AACCGATTTA GAAAAATCCT TGATATGATT AAAGGAAAAA AATGA
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| Protein sequence | MGKTYIDGKE VVSQAAAGKV FKPDDFVFLR KKDIPGVAPY RNDSGSIDNP AGSTFHSGTD
VATAESALMN GWHAPQVSKG GVITLVRDGP ATFTGNWGKQ VWIEDHKTVR HETDVGTTSI
WSSFGAVKTA MSNTWDIAKE LDGDLASEIA GEFGDEVLAS LKDLFTWETL GGLVVDGGMA
LATAALTAAA PVTAGGSGAG ALMTGAATGV RVGQRVEAGA QTAAALKEEL GGLIADLTRP
DLSREEKRDM AKRAAGILAR STVGVGISII TKKSRPAKKR ENDKTDVKTS KKGESNPTKC
ACATENPVVL ATGEKTLTQT DFSFGGPIPM GWLRHYRSGD ARTDGWFGQG WSHPLATELW
LQADQLLYHD GQGRAVRLPG LEEGEEHFEA YERFTVRRTA PDAWQLVHTD GRIHHFARQA
AGQWRLPLVA LSDRNGNRIQ LHFDQSAFGP GFRPFATPPR PGRIADSAGR WFRLDWSPRG
QLESVHALHS GGEETLLAHY HYAPDAQDPR GELAPPNLVA HTNAAGRVRR FEWNRHLLVG
YTLADGARHH NEYDTLSPQG RVTVSRNLDS GAAHQFTYER HRTWMHDALG RTMGFAFDER
RDIVAVRDAL GHVSRTPFDA NGHPEAAVDA LGRETRTVFD RRGNLTLHLD AAGHATRIEY
GTEGGARDRP VRVTDALGHT WTHEYDARGN RIRSTDPLGR STATQYDARG LPVALTDAAG
RIRRLQWDAS AQLIAYTDCS GRTSRYAYDA LGHLAESADA LGHTTRYRHD AQGRLREVIE
PTGATHRYEW DGEGQLLAYT DPLGGTTRYR YHGSGQPSER TDARGGVLRY HYDLGERLVA
LTNENGAHTR FTYDAADHLT DEIGFDGRHQ RYVYNAAGEL THVIEAGGSD AGPGKVTHLE
RDALGRLVGK RAHGDASAED SRATYTYDPL GRLTAATNPA AAIAWRYDPV GQILQEVQTL
QPLPGQKGQP EERALSHEYD ELGHRIRTTL PDGRALDWLH YGSGHLHQIG LTEAGPGTRT
VITDIERDAL HRETQRSQGA LHSRYDYDPA GRLVRHRAAV GASSTSSSAT TVRLERAYAY
DALGQLVARA DTLRGSQEFR YDPVGRILAA LPGQGSHAPR ELFAFDPAGN LLDATEAQMQ
RAQQPQAHGS SSSGLGVVGD NRLRFYQDLH FEYDVHGNVV RRTRGNRRAG HHETTELRWN
ADHQLVEAAS HRNGVTQATH YAYDALGRRV AKADAFGTTR YLWDGDLMVH SQRGGKASLF
IYEPGSFVPL ATVQGTQQPG DSRIYWYQCD QIGAPLELTD AQGYIAWAAD YKVWGEATLR
AVPRTATGTD GVSGERRRGH GPVMDVHEGG GEKARPTPPA IIEQPFRFQG QQFDEETGLH
YNRFRYYEPS VGRFVSQDPI GLLGGVNSFT YAPSPNNWMD PFGLSCCPCP TGTATIHHYE
GTADNPFGHY SIEVTANGTS LHTHQGVFQD GKQTAILSNR GNSGTTQATV AIPDAKAAQD
YQRKMMGQYT GPYDRKDNSC VTHVAEVLKA GGVDMPREPK NRFRKILDMI KGKK
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