| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_3771 |
|---|
| Symbol | ispH |
|---|
| ID | 4668249 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 4191702 |
|---|
| End bp | 4192700 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639824963 |
|---|
| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
|---|
| Protein accession | YP_972092 |
|---|
| Protein GI | 120612414 |
|---|
| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0761] Penicillin tolerance protein |
|---|
| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCATCC AACCCCAGGA AATCGTTCTC GCCGAGCCCC GCGGCTTCTG CGCGGGCGTG
GACCGCGCGA TCGAGATCGT CGAGCGGGCC CTGCAGAAGT TCGGCGCGCC GATCTACGTG
CGCCACGAAA TCGTGCACAA CACCTACGTG GTGAACGACC TGAAGGCCAA GGGCGCGATC
TTCATCGAGG ACCTGGCCGA TGTGCCGCCG GGCGCCACCC TGGTGTTCAG CGCGCACGGC
GTCAGCAAGG CGGTGCAGGC CGAGGCCGAG GCGCGGGGGT TCAGCATCTT CGATGCGACC
TGTCCCCTGG TCACGAAGGT GCATGTGGAG GTGGCCAAGC TCGCGAAGGA AGGCTACGAA
TTCATCATGA TCGGCCACAA GGGCCATCCG GAGGTCGAGG GCACCATGGG GCAACTGGAC
CACGGCATCC ACCTCGTGGA AGACGTGGAG GACGTGGCCC GCGTGCAGCC GTCGCAGACC
GCGAAACTGG CCGTGGTCAC GCAGACCACG CTGTCGGTGG ACGACGCGGC CGAGATCACC
GCCGCCGTGC GCGCGCGCTT CCCGCAGGTG CGCGAACCCA AGCAGCAGGA CATCTGCTAT
GCCACCCAGA ACCGCCAGGA CGCGGTGAAG GTGCTGTCCG GGCAGGTGGA TCTCGTCATC
GTGGTGGGCA GCCCCACCAG CTCCAACAGC AACCGGCTGC GCGAACTGGC GGTGCGGCTG
GGCACGCCCT CCTACATGGT GGACAGTGCC GACGAGCTGC GGCCGGAGTG GTTCGATGGC
GCCGCCCGCG TCGGCCTCAC GGCGGGCGCG TCGGCCCCCG AGGTGCTGGT GCGGCAGGTG
ATCGAACGCA TACGGGCGCT GGGCGCGGTG TCGCTGCGCC GGATGGACGG CATCGAGGAG
ACGGTGAAGT TCCCGCTGCC CAAGGGCCTG AAGATCGACG CGGCCACCGG CCTGGAAATC
TCCCAGCGCA CGCCCGAGAC GGGGGCGGGG CGGTCCTGA
|
|---|
| Protein sequence | MAIQPQEIVL AEPRGFCAGV DRAIEIVERA LQKFGAPIYV RHEIVHNTYV VNDLKAKGAI
FIEDLADVPP GATLVFSAHG VSKAVQAEAE ARGFSIFDAT CPLVTKVHVE VAKLAKEGYE
FIMIGHKGHP EVEGTMGQLD HGIHLVEDVE DVARVQPSQT AKLAVVTQTT LSVDDAAEIT
AAVRARFPQV REPKQQDICY ATQNRQDAVK VLSGQVDLVI VVGSPTSSNS NRLRELAVRL
GTPSYMVDSA DELRPEWFDG AARVGLTAGA SAPEVLVRQV IERIRALGAV SLRRMDGIEE
TVKFPLPKGL KIDAATGLEI SQRTPETGAG RS
|
|---|
| |