| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_1521 |
|---|
| Symbol | |
|---|
| ID | 4665534 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 1686187 |
|---|
| End bp | 1688679 |
|---|
| Gene Length | 2493 bp |
|---|
| Protein Length | 830 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 639822723 |
|---|
| Product | heavy metal translocating P-type ATPase |
|---|
| Protein accession | YP_969884 |
|---|
| Protein GI | 120610206 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2217] Cation transport ATPase |
|---|
| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01525] heavy metal translocating P-type ATPase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0875658 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.721674 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGCCCTG GGGGGTGGGC GCATAGCCTC GGGGCCATGC TTTCCGATCC CTCCGAGTCG
CCTGCCGCCA GTTCCGCCAT CGACAGGGAG GCACTGCCCG GCAGCCCATC CGTGGACGGG
GACGCGTTGC TGGACGATCC GCAGGAATGG CCATCGTTTG GCCGTCCGCA TGCCTCCGCC
ACCGGTCCGG CGCAGGGTGT CTGGGATTCC CATGTCGTGT TGCAGGGCAT GCATTGCGCG
GCCTGCGCGC TGACCATCGA GGATGCGTTG CGTGCCGTGC CCGGCGTGCT GCAGGCCGAG
GTGAGCGCCG CCACGCACCG CGCCCGCGTG GTCTGGGACG CGGGCGTCGT CCGGCCCTCA
CGCTGGTTCG CCGCGGTGGC CCGCGCCGGC TACCCCGCCC TGCCGGCGAT GGACGCGCTG
GCGCGGGAGC AGCGCCGCCG CGAGGGCCGC CGCGCCCTGT GGCGCTGGCT GGTGGCGGGC
TTTTGCATGA TGCAGGTGAT GATGTACGCG TGGCCCGCGT ACGTGGCGCA GCCGGGAGAC
CTCACGGCCG AGATGGAGCG GTTGCTGCGC TGGGCCTCGT GGGTCATCAC GCTGCCGATG
ATGATCTTTT CGTGCGGCCC ATTCTTCTCC AGCGCGCTGC GCGACCTGCG GCAGCGCCGC
GTGAGCATGG ACCTGCCGGT GGCGCTGGGC ATGGGCATCA CTTTCGTGGT GAGCACGGCA
GGCACCTTCG ACCCGGCCGG TCCCTTCGGG CGCGAGGTCT ATTACGACTC GCTGACCATG
TTCGTGTTCT TCCTGCTCAC GGGACGCTGG CTGGAGATGC GGCTGCGCGA CCGCACGGCG
GGCGCGCTGG AGGCGGTGAT GAACCGCCTG CCCGACAGCG TGGAGCGCCG TGGTGCCGAC
GGCACCTTCA CGCGCGTGGG CGTGCGCCGG CTGGCGGCGG GCGACGTGGT CCGCGTCCTG
CCGGGCGAGG CCTTCCCGGC CGACGGCCGC ATCGACCGCG GCAGCACGCA GGTGGACGAA
GCCCTGCTCA CGGGGGAATC GACTCCGCTG CCGCGCGCGG AAGGCGCGGC CGTCACGGCC
GGCAGCTACA ACCTGAGCGC GCCTGTGGAG GTGCGCGTGG AGCGCGTCGG AGGCGATACG
CGTTTCGCCG AGATCGTCGC GCTGATGGAG GCGGCGTCCG CGCAGAAACC TCGGCTGGCG
CAACTGGCCG ACCGCATCGC GCGGCCGTTC CTGGTGGGCG TGCTGCTGGC TGCGGGCCTG
GCCGCCGCGT GGTGGTGGAG GGCGGACCCC GAGCATGCGC TCATGGTCGC GGTGGCGGTG
CTCATCGTGA CGTGCCCGTG CGCGCTCTCC CTCGCCACGC CGGTGGCGAT GCTCACGGCG
GCGGGCGCGC TGGCCCGGCA GGGCGTGCTG GTGCGCAATC TGCAGGCACT GGAAACCCTG
GCTGCCGTGG ACACGGTCGT GTTCGACAAG ACCGGCACGC TCACGCGGGA CGGTGTCCGC
ATTGCCGGCG TGCATCCGGC GCCGGGCTTC GAGCCGGCCG ATGCGCTGGC CCTGGCGGCG
GCGTTGGCGC GGCACTCGCT GCATCCGCTG TCGCGCGCGC TGGTGGAGGC GGCCGGGCCT
CAAGGGCAGG GCGCCGCCGC GCGCTGGCGC GTGAGCGACG TGCGCGAGGT GGCGGGGCAG
GGCCTCGTCG CCCGCGTGGA CGACGGCGAA GGCCGGCTCG CGCCCGCGGT GGTGCGGCTC
GGCCGTGCGG CGGACAGCGT CCCTGTGGAC GCCCAGCAAC TGGCGTTGTG CGCGCAGCCG
CTGCACGGCA GTGCCGGGGA CCGGGGGGGC GCAGCGTCCC CCGCCGGCTG GCCCGCCGAG
ATCGCTCGCT TCGGCTGGCG CGAGGATCTG CGGTCCGATG CGGCCGGCGT GATCGTCCGG
CTGCGTGGCG CGGGCCTCGC GGTCGAGTTG CTTTCCGGCG ACCGCGACGA TGCCGTGGCG
CGCGTGGCCG CGGGCGCGGG CATCGAGGTA GCGCGGGGCG GCTGCGCCCC GCAGGGCAAG
CTCGACCACA TGCGCGCGCT GCAGGCCGCC GGCCGGCACG TGGCGATGGT GGGCGACGGC
CTCAACGACG GGCCGGTGCT CGCGGGCGCG CACGTGTCGT TCGCGTTCGG CCGGGCCGTG
CCGCTCGCGC GGTCGCGTTC GGATTTCGTG GTGATGGGCG AGCAGCTCGC GATGGTCGAG
CGCAGCGTGC GGCTCGCGCG GCGCACGCTG CGCGTGGTGC GCCAGAACCT GGCCTGGGCC
GCTGCCTACA ACGCGCTGTG CGTGCCGCTC GCGGTGGCGG GCTGGATGCC GGCCTGGCTC
GCGGGCCTGG GGATGGCGCT CAGCTCGCTG CTGGTGGTGG CCAACGCGGC GCGCCTCGCA
AGGGGCGCGG GCAGCGATGC CGAAACGGCC GCCATGGCGC CGGACGCTGC CGTGCCGCCT
GACGCGGCTC CCCTGGTGCA GGGAGCCGCG TGA
|
|---|
| Protein sequence | MCPGGWAHSL GAMLSDPSES PAASSAIDRE ALPGSPSVDG DALLDDPQEW PSFGRPHASA
TGPAQGVWDS HVVLQGMHCA ACALTIEDAL RAVPGVLQAE VSAATHRARV VWDAGVVRPS
RWFAAVARAG YPALPAMDAL AREQRRREGR RALWRWLVAG FCMMQVMMYA WPAYVAQPGD
LTAEMERLLR WASWVITLPM MIFSCGPFFS SALRDLRQRR VSMDLPVALG MGITFVVSTA
GTFDPAGPFG REVYYDSLTM FVFFLLTGRW LEMRLRDRTA GALEAVMNRL PDSVERRGAD
GTFTRVGVRR LAAGDVVRVL PGEAFPADGR IDRGSTQVDE ALLTGESTPL PRAEGAAVTA
GSYNLSAPVE VRVERVGGDT RFAEIVALME AASAQKPRLA QLADRIARPF LVGVLLAAGL
AAAWWWRADP EHALMVAVAV LIVTCPCALS LATPVAMLTA AGALARQGVL VRNLQALETL
AAVDTVVFDK TGTLTRDGVR IAGVHPAPGF EPADALALAA ALARHSLHPL SRALVEAAGP
QGQGAAARWR VSDVREVAGQ GLVARVDDGE GRLAPAVVRL GRAADSVPVD AQQLALCAQP
LHGSAGDRGG AASPAGWPAE IARFGWREDL RSDAAGVIVR LRGAGLAVEL LSGDRDDAVA
RVAAGAGIEV ARGGCAPQGK LDHMRALQAA GRHVAMVGDG LNDGPVLAGA HVSFAFGRAV
PLARSRSDFV VMGEQLAMVE RSVRLARRTL RVVRQNLAWA AAYNALCVPL AVAGWMPAWL
AGLGMALSSL LVVANAARLA RGAGSDAETA AMAPDAAVPP DAAPLVQGAA
|
|---|
| |