| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_1254 |
|---|
| Symbol | |
|---|
| ID | 4667108 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 1377354 |
|---|
| End bp | 1377932 |
|---|
| Gene Length | 579 bp |
|---|
| Protein Length | 192 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 639822447 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_969619 |
|---|
| Protein GI | 120609941 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0784448 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.00558378 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCCTT CCATTGTCGC CAATGTCCCG CCCTCTCCGC ACTCCATGCT GCTCTTGAAG
ACCGACAAGG CCCGCCTGGA ACTCTCCCCG GGCGTGCGCA CCCTCAGCCT GCGCGAACGC
TCATTGCTGC TGCTGGTCGA CGGCCGGCCC GCGGCCGAGC TGGAAGCGCT CTACCACGGC
GCCGGCAAGG ACATCGTGGC CCGCCTGCTG GCGGACGGCT ACCTCGCGCA GGCCGGCGGC
GCGGCGGCCC CGGCGCCTGC CGCCACACCG TCCGCAGCCG CCGTGCCGCG CCAGGCGCCA
TCCGGGGCCC CGCCGGAAGC CCCGCCCGCG CCTTCCAACG CGCTGCGCTC GCTCGCGGGC
GCACGCATGT ACCTGTTCGA CATCTGCGAG CGCATGTTCG CGCGGCGCAA CCCCGCGCTG
GCCCAGAACT TCCTGGACGC GCTGCGCGGC GCGCGCGACC GCGACAGCAT GATGGATGTC
AGCGAGGCCT TGCTGGAAGA GATCGAACTG CTGGCCGGAC CGGAACGGGC CGCCACCGTG
CGCCGGCGCA TGGAGCAGTT GCTGCCCACG CCGGCCTGA
|
|---|
| Protein sequence | MQPSIVANVP PSPHSMLLLK TDKARLELSP GVRTLSLRER SLLLLVDGRP AAELEALYHG
AGKDIVARLL ADGYLAQAGG AAAPAPAATP SAAAVPRQAP SGAPPEAPPA PSNALRSLAG
ARMYLFDICE RMFARRNPAL AQNFLDALRG ARDRDSMMDV SEALLEEIEL LAGPERAATV
RRRMEQLLPT PA
|
|---|
| |