| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_0881 |
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| Symbol | |
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| ID | 4667940 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax citrulli AAC00-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008752 |
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| Strand | + |
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| Start bp | 956995 |
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| End bp | 958116 |
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| Gene Length | 1122 bp |
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| Protein Length | 373 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 639822081 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_969253 |
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| Protein GI | 120609575 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.588109 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCACCCG TCCATTTCCT GAAGGCCTTT CCCGAAGACG GCGATGCGCC GGCCCGGCAC
CGGTACGCGG CACCGCTGCT CACGCTGCCG GGCGCCCGGG CCATGCCCAC GTCGATCCGC
GCCACCGCGC AGGTGTTCGA GGACCCGCGC TCGCTGGCGC TGCTCGAGCG CATCCGCCTC
GTCGCGCCCA GCGATGCGAA CGTGCTCATC CTGGGCGAGA CGGGCACCGG CAAGGAACTG
ATCGCGCGCC ACGTGCACGC GCTGAGCGCG CGGCGCTCAG GGCCGTTCGT GGCCGTGAAC
TGCGGTGCGC TGTCGGAGAC GCTGGTGGAG AGCGAACTGT TCGGCCACGA GAAGGGCGCC
TTCACCGGCG CCTTCACCGC CAAGGCCGGC TGGTTCGAGG CCGCCCACGG CGGCACGCTG
TTCCTCGACG AGGTGGGCGA CCTGCCGCTG TCCATCCAGG TCAAGCTGCT GCGGGTGCTG
CAGGAGCGCG AGGTGGTGCG GCTGGGTGCG CGAAGGAGCC TGCCGGTGGA CGTGCGCGTG
GTGGCGGCCA CCAATGTGCG CCTGCAGGAC GCGGTGGCCG CGGGGAATTT CCGCCAGGAC
CTGTTCTACC GGCTGCATGT GGTGAACCTC GCGCTGCCCA CGCTGCGCGA GCGGCCGGGC
GACATCCTGC CGCTCGCGCG CCATTTCATC GACGAGTACC GGCACCGCCT GGGCTACGGT
CCGGTGCGGC TCGATGCGGG TGCGGAGCGC AAGCTGCTCG CCCACGACTG GCCCGGCAAC
ATCCGCGAGC TGGAGAACGT GATCCACCAC GGCCTGCTGG TCTGCCGCCG CGGCGTGCTC
CTGGCCGAGG ACCTGCAGCT GTCGTCGCTG GGCCTGCGGC GCCGCTCCGG GAGCGACGCG
CCGGCGGATG CGACGCCGCT GCAGGCGCTG GAAACGGCGC TGTCGGGCCT GTTCCAGCAG
CAGGGCGACC AGTTGTACGA GCGCATCGAG GAAACCGTCG TGCGCGCCGC CTTCGAGTTC
TGCCACCGCA ACCAGGTGCA GGCCGCGCGC CTGCTGGGCA TCAGCCGCAA CGTGCTGCGC
GCGCGCCTGA TCCGGCACGG GGACATCACG GCGTTGAGGT GA
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| Protein sequence | MPPVHFLKAF PEDGDAPARH RYAAPLLTLP GARAMPTSIR ATAQVFEDPR SLALLERIRL
VAPSDANVLI LGETGTGKEL IARHVHALSA RRSGPFVAVN CGALSETLVE SELFGHEKGA
FTGAFTAKAG WFEAAHGGTL FLDEVGDLPL SIQVKLLRVL QEREVVRLGA RRSLPVDVRV
VAATNVRLQD AVAAGNFRQD LFYRLHVVNL ALPTLRERPG DILPLARHFI DEYRHRLGYG
PVRLDAGAER KLLAHDWPGN IRELENVIHH GLLVCRRGVL LAEDLQLSSL GLRRRSGSDA
PADATPLQAL ETALSGLFQQ QGDQLYERIE ETVVRAAFEF CHRNQVQAAR LLGISRNVLR
ARLIRHGDIT ALR
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