| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_0448 |
|---|
| Symbol | |
|---|
| ID | 4669717 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 485266 |
|---|
| End bp | 485529 |
|---|
| Gene Length | 264 bp |
|---|
| Protein Length | 87 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639821655 |
|---|
| Product | HrpO family type III secretion protein |
|---|
| Protein accession | YP_968829 |
|---|
| Protein GI | 120609151 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4794] Type III secretory pathway, component EscS |
|---|
| TIGRFAM ID | [TIGR01403] type III secretion protein, HrpO family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.100595 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCACG ACAACATCGT CCAGCTCACC TCCGAAGCAC TCATGCTGTG CCTGCTGCTG
TCGCTGCCGG CCGTGGCCGT CGCGGCGATC GTGGGCCTGC TCGTGGCGCT GGTCCAGGCC
GTCACCTCGC TGCAGGACCA GGCGATCTCG CAGGGCATCA AGCTGATCTG CGTGACGGTC
ACCGTCGCTG TGAGCGCGCC CTGGGTGGGC AGCACCGTGC TGCAGTTCTC GCAGCGGCTT
CTCACGGCCG TCTTTTCGCC ATGA
|
|---|
| Protein sequence | MNHDNIVQLT SEALMLCLLL SLPAVAVAAI VGLLVALVQA VTSLQDQAIS QGIKLICVTV
TVAVSAPWVG STVLQFSQRL LTAVFSP
|
|---|
| |