| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_3108 |
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| Symbol | sdr_1 |
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| ID | 7134987 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011761 |
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| Strand | + |
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| Start bp | 2793376 |
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| End bp | 2794167 |
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| Gene Length | 792 bp |
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| Protein Length | 263 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 643531459 |
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| Product | oxidoreductase, short-chain dehydrogenase/reductase family |
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| Protein accession | YP_002427470 |
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| Protein GI | 218665265 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0812933 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAATT ACGTACCAGT TGATGGCTTG CTGAACGGGC GTGTAATCAT TGTTACAGGA
GCCGGAGAAG GGATTGGTCG CTGTGCTGCC GTAGAATTTG CTCGTTTGGG TGCTGAAGTA
GTGTTATTGG GCCGAACTCA GCGGAAGCTA GAGGGTGTAT ACGACGAAAT TGTTGATTCA
GGTTATAAAG AGCCGGTTAT ACATCCCATG GATTTGCTGA CTGCCAAGGG GCGCGATTAT
CAGGATTTTG CGCAGCGCCT GAAGGAGAGT TTAGGCCGTT TGGATGGGAT CCTGCACAAC
GCTGCGGAAC TCGATATATT GACACCGATC CAGTATTACG ACGAGGAGTT GTGGGAAAGC
GCGATGAAAG TGAACGTGAC CGCGCCATAC TTATTGACAC AAGCCTGTTT GCCACTGTTG
CTGGCATCCG AGGATGCCTC CATTGTTTTC ATTACTGATG ACTGCGCCCG TGAGGCAAAA
GGTTATTGGG GTGCCTATGC TGTAAGTAAA GCGGCAGTAC AACACCTTGG ACTTACGCTT
GCAATTGAAT TACAAAACAC CAACGTTCGC GTGAACGTGA TAAATCCTGG GCCATGCCGT
ACGGGAATGC GGGTGAGGAC ACATCCGGGA GCGTCAATAA TGTCCGTTCC ACCACCGATA
GCGATCATGC CCCTTTATGA ATATTTGTTA GGGCCCGATA GCAAAAATAC ACGTGGGCAG
ATCATGAATG CCAGAGATTG GCTGGATGCG GAACACGATG ATCGCCAGAT AGTTGCTGTT
CTTGAGCAAT AA
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| Protein sequence | MNNYVPVDGL LNGRVIIVTG AGEGIGRCAA VEFARLGAEV VLLGRTQRKL EGVYDEIVDS
GYKEPVIHPM DLLTAKGRDY QDFAQRLKES LGRLDGILHN AAELDILTPI QYYDEELWES
AMKVNVTAPY LLTQACLPLL LASEDASIVF ITDDCAREAK GYWGAYAVSK AAVQHLGLTL
AIELQNTNVR VNVINPGPCR TGMRVRTHPG ASIMSVPPPI AIMPLYEYLL GPDSKNTRGQ
IMNARDWLDA EHDDRQIVAV LEQ
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