Gene AFE_3029 details

Gene Information

• Locus tag: AFE_3029
• Symbol: kdsC
• ID: 7135345
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: -
• Start bp: 2720512
• End bp: 2721066
• Gene Length: 555 bp
• Protein Length: 184 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 643531380
• Product: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
• Protein accession: YP_002427396
• Protein GI: 218667708
• COG category: [R] General function prediction only
• COG ID: [COG1778] Low specificity phosphatase (HAD superfamily)
• TIGRFAM ID: [TIGR01662] HAD-superfamily hydrolase, subfamily IIIA; [TIGR01670] 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAACACCT GCATGTTGCC GGATGCGGCA TTGTCGCAAC GCGCCGCGCA GGTTCGTCTG 
CTGATGCTCG ATGTGGATGG CGTATTGACG GACGGCCGCC TGTTTTTTGA CGATGACGGC 
AGGGAAAGCA AGGCCTTTCA TGTGCGGGAT GGTTACGGCA TCAAACTCTT GCAGGAATGT 
CACATCGAGG TTGCCGTCAT AACGGCACGC TACTCTCCGA CGGCCGCCTA TCGCGCTCAT 
GATCTGGGCA TCAAGCGGAT TTACCAGGGC TGTTCGGATA AAAACCTGGC CTACACCGAA 
CTGAAAATCG CCCTTGGCCT GGATGATGCC GTTGTGGCCT ATATGGGGGA CGATCTGATC 
GATCTGCCCA TTCTCACCCG CGTCGGCCTG GCGACGGCTC CGGCCGACGC GCACCCGGAG 
GTCGGTTGCC GGGTACACTG GCAGAGCGCA CAGCGCGGTG GACGTGGCGC GGTGCGCGAA 
CTCTGCGAAC TGATTCTGCA GGCGCAAGGG CATTGGCCAG CAATCCTCGC CAGATCTGCC 
GGAGCTGAGC CTTGA 

 

Protein sequence

MNTCMLPDAA LSQRAAQVRL LMLDVDGVLT DGRLFFDDDG RESKAFHVRD GYGIKLLQEC 
HIEVAVITAR YSPTAAYRAH DLGIKRIYQG CSDKNLAYTE LKIALGLDDA VVAYMGDDLI 
DLPILTRVGL ATAPADAHPE VGCRVHWQSA QRGGRGAVRE LCELILQAQG HWPAILARSA 
GAEP