| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_2341 |
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| Symbol | rdgB |
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| ID | 7134328 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011761 |
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| Strand | - |
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| Start bp | 2088723 |
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| End bp | 2089346 |
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| Gene Length | 624 bp |
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| Protein Length | 207 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643530707 |
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| Product | non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family |
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| Protein accession | YP_002426734 |
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| Protein GI | 218666941 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0127] Xanthosine triphosphate pyrophosphatase |
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| TIGRFAM ID | [TIGR00042] non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.140719 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACGCCCT TGTTGCTGGC CACGAGTAAT GCAGGCAAGT TGCGTGAGTT GCAACCGCTG
CTTGCCGCCC GTGGCTTCGC GCTCGTCGGC CAGACGGAAC TGGGCATCGC CGGTATGGAA
GAAACAGGCA CCACCTTTGT GGAAAATGCA TTGCTCAAGG CACGCCATGC CGCCTCGCAA
AGTGGTATGG CGGCGCTCGC CGAAGATTCC GGGCTTTGTG TGCCCTATCT CCAGGGAGCA
CCCGGCATTT ACTCCGCGCG TTATGCCGGC CCGGACGCCA GCGATGCAGC CAATAACGCG
AAGTTGCTGA GCATGCTGGC CGAGGCGCGG GGGGAAGCCC GTGCTGCCTA TTACGTGGCT
TGCATGGTTT TTCTGGAATT TGCCACCGAC CCTTCGCCAC TGGTAGCCCA AGGCTTTTGG
AGAGGGACTA TTGGTGAGCG TCCTGCCGGC GACGGGGGGT TTGGCTACGA TCCCCTGTTT
TGGCCCACGC ATGGATCTGG CAGCGCGGCA CAGTGGAGCC TGAAGAAAAA AAACGAACAC
AGCCACAGAG CGGCGGCCTT ACGCAGGTTG CTGGGGTTGC TGGCGGAGCG TCAGCAACCC
CAGCCGCTCT CGCTCAACGA CTGA
|
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| Protein sequence | MTPLLLATSN AGKLRELQPL LAARGFALVG QTELGIAGME ETGTTFVENA LLKARHAASQ
SGMAALAEDS GLCVPYLQGA PGIYSARYAG PDASDAANNA KLLSMLAEAR GEARAAYYVA
CMVFLEFATD PSPLVAQGFW RGTIGERPAG DGGFGYDPLF WPTHGSGSAA QWSLKKKNEH
SHRAAALRRL LGLLAERQQP QPLSLND
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