| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_1521 |
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| Symbol | nifD |
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| ID | 7134200 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011761 |
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| Strand | - |
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| Start bp | 1318381 |
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| End bp | 1319856 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 643529909 |
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| Product | nitrogenase molybdenum-iron protein, alpha subunit |
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| Protein accession | YP_002425949 |
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| Protein GI | 218666771 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG2710] Nitrogenase molybdenum-iron protein, alpha and beta chains |
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| TIGRFAM ID | [TIGR01282] nitrogenase molybdenum-iron protein alpha chain
[TIGR01862] nitrogenase component I, alpha chain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCATTA CCGCTGAAGA AACCCGGGAG CAGATTGTCG CCGAGACCAA GACGCGCAAT
CGTGCCCTGA TTGATGAAGT TCTCAAGGTC TATCCGGAAA AAACCGCCAA GAGACGCGCC
AAACACCTGA ACGTCTTCGA GGACGGTAAA TCGGATTGCG GCGTCAAATC CAATATCAAG
TCGGTGCCCG GCGTGATGAC CATTCGTGGT TGTGCCTATG CGGGTTCAAA GGGCGTCGTC
TGGGGTCCGA TCAAGGACAT GATTCACATT TCCCATGGAC CCGTCGGTTG CGGCCAGTAT
TCCTGGGGCT CGCGACGCAA CTATTATATT GGCACAACGG GTGTGGATAC CTTTGTCACG
ATGCAGTTCA CTTCCGATTT TCAGGAAAAA GATATCGTTT TCGGCGGTGA CAAGAAGCTC
GAAAAAATCA TGGATGAAAT CGAGGACCTC TTCCCGCTGA ACCACGGTAT TACCGTGCAA
TCGGAATGCC CCATCGGCCT GATCGGAGAC GATATCGAAG CGGTGTCCAA AAAGAAGTCC
AAGGAATTTG GTGGAAAAAC CATTGTTCCG GTGCGTTGTG AGGGCTTCCG GGGGGTATCC
CAATCGCTCG GCCACCATAT CGCCAACGAC AGCGTCCGCG ACTATGTCTT CGAGAAACAA
GGCGCGGAAC CCAAGGCCTT TGAAAAGACC CCTTACGATG TCGCCATTAT TGGTGACTAT
AACATCGGCG GCGATGCCTG GAGTTCACGC ATCCTGCTGG AAGAAATGGG TTTGCGGGTG
ATTGCCCAAT GGTCCGGCGA TGGTTCTCTG GCGGAATTGG AGAACACCCC CATGGCCAAA
TTGAATGTCC TGCACTGCTA TCGTTCCATG AACTATATCT CCCGCTACAT GGAAGAAAAG
CATGGCGTGC CGTGGGTCGA GTATAACTTC TTCGGACCTT CCAAAATTGC CGAGTCTTTG
CGGACGATTG CCAGTTATTT TGATGATCAC ATCAAGGAAG GCGCGGAACG GGTTATCGAG
AAGTACAACC GCCTCACCGC AGAAGTGATC GCCAAATACC GGCCGCGCCT GGAAGGCAGA
ACGGTCATGC TTTTTGTCGG GGGATTGCGT CCTCGCCATG TCATCGGTGC CTATGAAGAT
CTCGGCATGA ATGTAGTGGG AACCGGCTAT GAATTCGGCC ACAACGACGA CTATCAGCGT
ACTACCCACG ATGTGAAAGA CGGTACGCTG ATTTATGACG ATGTGACCGG CTACGAGTTT
GAAAAGATGG TGGAAACCAT CCAGCCCGAT CTCGTGGGTT CCGGCATCAA GGAAAAGTAT
GTCTTCCAGA AGATGGGCGT GCCCTTCCGC CAGATGCACT CCTGGGACTA TTCCGGTCCT
TATCACGGCT ATGACGGCTT CGCCATCTTC GCCCGGGATA TGGATATGGC CATCAACAAC
CCGGTGTGGA GTTTGACCAA GACGCCCTGG GAGTAA
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| Protein sequence | MSITAEETRE QIVAETKTRN RALIDEVLKV YPEKTAKRRA KHLNVFEDGK SDCGVKSNIK
SVPGVMTIRG CAYAGSKGVV WGPIKDMIHI SHGPVGCGQY SWGSRRNYYI GTTGVDTFVT
MQFTSDFQEK DIVFGGDKKL EKIMDEIEDL FPLNHGITVQ SECPIGLIGD DIEAVSKKKS
KEFGGKTIVP VRCEGFRGVS QSLGHHIAND SVRDYVFEKQ GAEPKAFEKT PYDVAIIGDY
NIGGDAWSSR ILLEEMGLRV IAQWSGDGSL AELENTPMAK LNVLHCYRSM NYISRYMEEK
HGVPWVEYNF FGPSKIAESL RTIASYFDDH IKEGAERVIE KYNRLTAEVI AKYRPRLEGR
TVMLFVGGLR PRHVIGAYED LGMNVVGTGY EFGHNDDYQR TTHDVKDGTL IYDDVTGYEF
EKMVETIQPD LVGSGIKEKY VFQKMGVPFR QMHSWDYSGP YHGYDGFAIF ARDMDMAINN
PVWSLTKTPW E
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