| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_1230 |
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| Symbol | |
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| ID | 7135215 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011761 |
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| Strand | - |
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| Start bp | 1082930 |
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| End bp | 1084759 |
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| Gene Length | 1830 bp |
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| Protein Length | 609 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643529626 |
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| Product | DNA ligase, NAD-dependent, putative |
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| Protein accession | YP_002425666 |
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| Protein GI | 218667573 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCTCG TACACAAGCT GGAAGAAGCC AATGCCGCCT ACCGCGCCGG CGCTCCGATC
ATGAGCGACG CCGAGTACGA TGCGCTGGTG GAACGTCTTC GCCGTGAGCA GCCCGACCAT
CCCTATCTAC AGACAGTGGA ACCCGAACCG GAAAACATCT TTGGCGGTGC CAAGGTGCGT
CATCACGCGC CGATGTTGTC TACGGAGAAG GCTTATACGG AAAGTGACCT GATTCGATAT
TTCAGCGCGG TGACCCGTCA GGCGGCCCGG TTGGGCATGG ATGAGGTCAT TTATGCGATG
ACGGCAAAGC TGGACGGTCT AGCCGGCAGC CGGGACCGTG CGCATGGCGT GGATCTGGCG
ACGCGCGGGA ACGGGTTGCA GGGAGAGGAT ATCGGCAAGG CGTTTGCGCG AGGATTGAAG
ATCGTTGGCG CGGATGTGGA TGGTCCTGGC GAGATAGTCA TGCCCAAGGA CTTTTTCGAG
GAGCATCTGG TTCCGTTGGG CTTTAAGCAT CCACGAAATT TCATGGTGGG TTTTGTGGGG
GCCGACACGG AAAAGGATCA CCACCGCCTG GTAAAAGAAT CCGGTATGGC GCACTTCGTT
CCTTATGCCA ATCTGCCCCG TTTCTATGCC GATAAGGACA CCATTCTGCG AGACATCGCG
TACATCTCGG AAGACATACG CAAGAATACC CCGTATGACA CCGACGGTAT CGTCATCGAA
GTGGAAGAAC CGGAGCTGCG CGCCGCGTTG GGCAGCACCA ATCACCACCA CCGTTGGCAG
ATCGCCTACA AAACCAAAGG CGAAACGGCA GAAACAACGG TTACTGGCGT GGTCTGGCAG
ACGGGGCGCA CGGGCCGCAT CACCCCGGTG ATCGAGATCG ATCCGGTGGA ACTGTCCGGG
GCGACCATTC GTCGCGCCAC CGCCCACAAC TTCCAGAAGG CACGGAAGGA CGGGCTTGGC
GTGGGGTCGC GGGTCACCAT GATCCGTTCC GGCGAGGTGA TTCCCTTCAT CATGGACGTG
CTATCCCCTG CCCCGCTGGA TGTGCCCACG GCTTGTCCCT GCTGCAACGG ACCCGTGGAA
GAGGATGGCG AATACCTCAC TTGCGTCAAC CCGCATTGCG AAGCCCAGGC GGAAGGCGCA
ATCAGCCATT TTTTTAAGAT CATGGGTACG GCGGATGGAT TCGGCCCCAA AGCCGTGGAG
AAGATCGTGG CGGCGGGCAT TACCGATATA TTGGCCGTGC TGGACATGAC CCGCGCCGAC
TTCGAAGGTA TGGGCTTCGG CCCTGGGCAA GCGGAAAATC TGGAGCGGGA AATGAAACGT
TGCATGAGTA CGCCCGTTGA GGATTGGCGA TTCCTGGCCG CATTTGGCAT CCGATATCTG
GGGCGCGGGG ACAGCAAAGC TTTGCTGTGC GCGATTGGGG GACTGGATGC GCTCAATGGC
ATCACGCCTG CGCAGATCAT GGCGATAGAT GGATTTGCCG AAAAAACAGC TCTCTGCATC
GCTCATGACC TAACGTGGCG ATGGATGGAG ATCGAGGCGG TTAGGGATCG GATGGAAGCG
CCCTTGGTTT CATCGGCGCC AGCGGGCGAC ATTGGAACGC TCCCGCTTGC TGGTATGTCC
CTGGTTTTCA CGGGCACCTT CAGCAAAGAT CGGGAGGTGA TGGAAACCCA GGCGGAAGCG
TTGGGCGCCA AGGTGCAATC TGGCGTCAAT GGCAAGACTT CGGTTCTGGT GATTGGAGAG
AAGCCGGGAG CGTCAAAGAC CACGAAAGCG GCGGCATTGG GCACTCCGGT TTGGACGGAA
GCGGAGTATT TACTTCGCAT TGGGGGGTGA
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| Protein sequence | MSLVHKLEEA NAAYRAGAPI MSDAEYDALV ERLRREQPDH PYLQTVEPEP ENIFGGAKVR
HHAPMLSTEK AYTESDLIRY FSAVTRQAAR LGMDEVIYAM TAKLDGLAGS RDRAHGVDLA
TRGNGLQGED IGKAFARGLK IVGADVDGPG EIVMPKDFFE EHLVPLGFKH PRNFMVGFVG
ADTEKDHHRL VKESGMAHFV PYANLPRFYA DKDTILRDIA YISEDIRKNT PYDTDGIVIE
VEEPELRAAL GSTNHHHRWQ IAYKTKGETA ETTVTGVVWQ TGRTGRITPV IEIDPVELSG
ATIRRATAHN FQKARKDGLG VGSRVTMIRS GEVIPFIMDV LSPAPLDVPT ACPCCNGPVE
EDGEYLTCVN PHCEAQAEGA ISHFFKIMGT ADGFGPKAVE KIVAAGITDI LAVLDMTRAD
FEGMGFGPGQ AENLEREMKR CMSTPVEDWR FLAAFGIRYL GRGDSKALLC AIGGLDALNG
ITPAQIMAID GFAEKTALCI AHDLTWRWME IEAVRDRMEA PLVSSAPAGD IGTLPLAGMS
LVFTGTFSKD REVMETQAEA LGAKVQSGVN GKTSVLVIGE KPGASKTTKA AALGTPVWTE
AEYLLRIGG
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