| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_0922 |
|---|
| Symbol | |
|---|
| ID | 7135063 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | + |
|---|
| Start bp | 835910 |
|---|
| End bp | 837373 |
|---|
| Gene Length | 1464 bp |
|---|
| Protein Length | 487 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643529321 |
|---|
| Product | drug resistance transporter, EmrB/QacA family |
|---|
| Protein accession | YP_002425397 |
|---|
| Protein GI | 218667025 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGACATCCT CATCAACGCC CGTTTCCGCA TCTACTTTTC GTCTGGACTG GCCGGCAAAA
GTCATTTTCT TCGCCATCCT GTCGTCCATT TTTTTGGCGG CGATGGACCA GACCGTGGTC
TCCACCGCCC TGCCGACCAT CGCCCGCGAT CTCCATGGCC TGGCCAAACT ACCCTGGATC
GTGACCGCTT ATCTGCTGAC CTCCACCGTC TGTTTGCCGG TATACGGTAA ACTGGGGGAT
CTTCTGGGGC GCAAGTATCT CCTGCAATCG GCAGTGTTGC TGTTTTTGGC AGGATCGGTT
TTGTCCGGCC AGGCGCAAAC CATTGACGAG CTGATGGTGT TCCGGGCCTT GCAGGGGATT
GGCGGTGGCG GTTTGCTGGT GACCGCCATC GCCTCCATCT CGGACTTCAT TCCCATCACC
CAGCGCAGCC GTTATCAGGG GCTGGTGGGC GCCGCTTTTG GTCTCGCGAC CTTGGTCGGG
CCCTTTCTCG GTGGCTTTAT CGTGGAGACC ATGGGCTGGC GTTGGATATT CTATATCAAT
GTGCCCATCG GTATATTTTC CTTTTTCGTC ATCGGCTTCG CCTTTCCCAG ACCGAAAACG
GCCGAAAAGG TGCGGATGGA TGTACCGGGA ACGGTCCTGC TGACCACCAG CCTGAGCGCC
CTGGTGTTAT TTGCCAGCGT GTCCGGGACG GTGTTGCCCT GGGATTCCGC CGGACCATGG
CTTCTTCTCG CCGCGGGGCT GAGCGCGTTC GGCGGATTTA TACGGATCGA GCGGCATCAT
CCGGAACCTC TGTTGCCGCT CGCTTTTTTT CGTTTCAGAA CTTTTTCGCT GAGTGTAATC
ATCTCTTTTT TTGTCGGGGT GGCGATGCTC GGTTCCGTCA GCTTTCTGCC CATTTATTTG
CAGGATGTGC GTGGTTTCTC GCCGACTGCC TCCGGTCTGG AACTGCTATT TTTGCTCCTG
GGCATGTTGG CAATGTCGGT GCTGACCGGG CGCCGGATCA GCCGGACTCA GCGTTATCGG
GAGTTTCCCA TCGCCGGCGC CCTGCTCATC ACCCTAGCGC TTGGGCTGCT TTCCATGCTC
GGGCAGCATA CGCCCATGTG GCGCATCGAC GCGGTACTGG TGCTGCTGGG ACTGGGGCTG
GGCACGACCA TGCAGGTCTT GGTGCTCTCT GCCCAGCTTG CGGTGCCGCA CCGCCACCTG
GGGGTGGCGA CGTCAACCGT CACCCTGTTC CGTTCCATGG GCGGCACTCT GGGGGTTGCG
GCTTTCGGCG CGGTGTTTTC TGCCTTTTTG GCGGGGGGAT CTCACGGTTA TGCCCAGGAG
GGGGCGCCTG CCCTGATCGT CCAGACGCTG CATGCGGACT TTTTGATCGC AGCGCTGTTC
AGCTTTGCCG CATCGGTCTG TGCGTGGTTT TTGGAGGATA TGCACGTGCT CGTCAAGCGC
CGGGATGCCC TCGATCGAGG GTGA
|
|---|
| Protein sequence | MTSSSTPVSA STFRLDWPAK VIFFAILSSI FLAAMDQTVV STALPTIARD LHGLAKLPWI
VTAYLLTSTV CLPVYGKLGD LLGRKYLLQS AVLLFLAGSV LSGQAQTIDE LMVFRALQGI
GGGGLLVTAI ASISDFIPIT QRSRYQGLVG AAFGLATLVG PFLGGFIVET MGWRWIFYIN
VPIGIFSFFV IGFAFPRPKT AEKVRMDVPG TVLLTTSLSA LVLFASVSGT VLPWDSAGPW
LLLAAGLSAF GGFIRIERHH PEPLLPLAFF RFRTFSLSVI ISFFVGVAML GSVSFLPIYL
QDVRGFSPTA SGLELLFLLL GMLAMSVLTG RRISRTQRYR EFPIAGALLI TLALGLLSML
GQHTPMWRID AVLVLLGLGL GTTMQVLVLS AQLAVPHRHL GVATSTVTLF RSMGGTLGVA
AFGAVFSAFL AGGSHGYAQE GAPALIVQTL HADFLIAALF SFAASVCAWF LEDMHVLVKR
RDALDRG
|
|---|
| |